Mustela nigripes (black-footed ferret): 132017819
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Entry
132017819 CDS
T09425
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132017819 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132017819 (SKIC2)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132017819 (SKIC2)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132017819 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
132017819 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
132017819
NCBI-ProteinID:
XP_059255883
LinkDB
All DBs
Position
5:28511875..28522973
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATQGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFTPKDHPAPASGLLSLSRLLEPLDLGGGDEDETEAVGQPGIPRGD
TVAASPCSASMARASSLEDLVLKETSPAVSPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLNSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELTETRSLIQQRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTSRVFTTLVLCDKPVSEDPQERPPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSRRQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIGGAQCVHSPRF
SAQYLKLQERVQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctacctcctccagatcccctggatctgccccttcgg
ccggtggagctgggatgcacggggcgctgggagctgctcaatgtgcctggggcaccagag
agcacccttccccacggcctccctccatgtgccccagatctgcagcaggaagcagaacag
ctgtttttgtcatctccagcctggttgcctctgcatggtgtggagcactctgcccgaaaa
tggcagaggaaaatggatccctggtcactcttggccacacagggggccccagtgccctct
gaccttcaggcccagagacacccaaccacaggccagattctgggctacaaagaggtcctg
ttggagaatacgaacctatcagccaccacctccttgtctcttcgccggcccccagggcct
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagatctaagcactcgggaggaggctgaggaggagatagactttgag
caagatcttcttactgttccgcctggcttcaaaaaaggtgtggactttacaccaaaggat
cacccagctccagcttctggcttgctcagcctcagccgtttgctggagcctctggatttg
ggtgggggagacgaggatgaaactgaggcagtgggacagccaggaattcccagaggggac
actgtggctgcctccccctgcagtgcttccatggcccgagcaagcagcttggaggaccta
gtgttgaaggaaacatccccagctgtatcccctccagagccccccaaacccctgcctcag
gagcagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccggccttccagtggtcatttgagccggatgtgttccagaagcaggccatcctg
cacttggagcggcatgactctgtcttcgttgcggctcacacatctgcggggaagacggtt
gtggctgaatatgccattgcccttgcccagaaacacatgactcgcaccatttacacatcg
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacacattcggggatgtg
ggattgctcactggggatgtgcagctgcacccagaggcctcctgcctcattatgacaaca
gagatccttcgctccatgctgtacagcggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactatatcaatgatgctgagcgtggggttgtgtgggaggaggtg
ctcatcatgctccctgaccatgtctccatcatccttctgagtgccaccgtccctaatgcc
cttgagttcgccgactggatcgggcgactgaaacgtcgccagatatatgtgatcagcact
gttgcgcgccccgttcccctggagcattatctcttcacggggaacagccccaagacccag
ggggagctttttctgttgctggactcccgaggcgccttccatacaaaggggtactatgcc
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaagcag
cccacgcatcagggggggcccgcacaggaccgtggtgtatacctgtcccttctggcctcc
ctccgcacccgcgcacagctgcctgtggtggtgttcaccttctcccggggtcgctgtgat
gagcaagcctcgggcctcaactcccttgacctcaccacgagttcagagaagagtgagatt
cacctcttcctgcagcgctgccttgcccgcctccgtggctctgaccgccagctgccccag
gtcctgcacatgtccgaacttctgcaccgcggcctgggtgtgcaccacagtggcatcctg
cctattcttaaagagatcgtggagatgcttttcagtcgaggcctggtcaaggtcttgttt
gccacagagacttttgccatgggtgtaaatatgcctgcccgaacagtggtgtttgactcc
atgcggaagcatgatggctccgccttccgggacctgctccctggagagtacgtgcagatg
gcgggccgggcaggccggaggggcctggaccccaccggcactgtcatcctgctctgcaag
ggccgtgtgcctgaaatggcagacctgcaccgcatgatgatggggaagccatcacagctg
cagtcccagttccgactcacatataccatgatcctgaacctgctgcgggtggacgccctc
agggtggaggacatgatgaagagaagcttctctgagtttccatcccgcaaggacagcaag
gctcatgaacaggctctagctgaactgaccaagagactaggggccttggaggaacctgac
acgactggccaattggttgacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcagcgcatcatggagtctgtgaatgggctcaagtctctctca
gcgggaagggtggtggttgtgaagaatcaggagtatcacaacacattgggtgtgatcctg
caggtctcctcgaactccaccagcagggtatttacaaccctggtcttgtgtgataagcct
gtgtctgaggacccacaggagaggccaccagccaccccagatgtgccctaccccgatgat
cttgtgggattcaagctgttcctgcctgaaggaccttgtgaccacacagtggccaagctc
cagccaggagatgtggccgccatcaccaccaaggttctccgggtgaatggggagaagatc
ttggaggacttcagcaggaggcagcaaccaaaattcaagaaggatcctcccattgcagct
gtgaccactgctgtgcaggaactgctgcgtctggctcaggcctacccagcgggaccccct
acccttgaccctgtcaatgacctgcagctcaaagatgtatcagtggtagagggggggctc
cgagcccggaagctggaggagctgattggcggtgctcagtgtgtgcacagccctcgtttc
tctgcccagtacctgaagctgcaggagcgcgtgcagatacagaaggagatggagcgacta
cgcttcctgctgtcagatcagtcactgctgctgctcccagagtatcaccagcgagtagag
gtgctccgaaccctgggttatgtagacgaggtgggcacggtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcatgtttgacaatgctctg
agtgccctgcggccggaggagattgcagccctgctctccggcctggtctgccagagccct
ggggacccaggggagcagctcccaagcaccctcaaacagggagttgaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcttgaaccagacagtggaggaa
tttgtgggggagctgaattttgggcttgtcgaagttgtgtacgagtgggcccggggcatg
cccttctccgagctggcggggctttcggggacccctgagggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcactgaggggggcagcccgccttgtaggtgagcct
gtgttaggtgccaagatggagacagcagctaccctgctacggagggacatcgtctttgca
gccagcctgtacactcagtga
DBGET
integrated database retrieval system
