Mustela nigripes (black-footed ferret): 132018412
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Entry
132018412 CDS
T09425
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
mnp
Mustela nigripes (black-footed ferret)
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnp03021
]
132018412 (SCAF8)
03041 Spliceosome [BR:
mnp03041
]
132018412 (SCAF8)
Transcription machinery [BR:
mnp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132018412 (SCAF8)
Spliceosome [BR:
mnp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
132018412 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
132018412
NCBI-ProteinID:
XP_059257301
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All DBs
Position
5:137688204..137910489
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AA seq
1291 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQLQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVAFNKKLMDRFDFGEDSEHSEEP
KKEISASQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPPLSMTPETVKDVGFGGLVLPGGSVASNLATSILPAGNVFNP
PTKQGEPEEKVPHLIDHQIPSGENTRSVIPNDIPSSPAMLGGQPPNVTSNSGILGVQRPN
VSSNSEIIGIRPSNVSSSSGMIGAQPPNILNNSGILGLQPPTVSSSSGLLGVLPPNIPNN
SGLIGVQPPNVPNAAGLLGTQPPAGPQNLPPLNLSNQRMPAMPMLDIRPGLMPQTPGPRF
PLIQPGIPPQRGIPPPSVLDSPLHPPPRGPFPPGDIFSQPERPFLVPGRQSVDNVTNPEK
RIPLGNDNIQQEGDRDYRFPPIEARESISRPPPVDVREVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRDFDEREHRVLPVYGGPKGLHEER
GRFRSGSYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGR
DRIQNTWVPPPHPRVFDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEKL
TSSSEINKEKSDTVADIESEPVVESTETEGT
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaaaccttcaatagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaacgactacaaacca
cccatttctaaagcgaaaatgacccaaattactaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagcgttgaaaaattcattcagaaatgtaaaccagaatacaag
gtacctggactttatgttattgactccattgtacgacaatctcgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggatgacaagagtaaaatagtgagagtattaaacttatggcagaag
aataatgtgtttaagagtgagattattcagcctcttttggacatggcagcagggattcct
cccccagttgtcacacctgttttggccagtactactgctgctatgagcaacaccccagga
actcctgtgacgcctgttactccagccaatgtggtccaaggtctgccagatccgtgggtg
tctcagataacaaacacagatacacttgcagcagtagctcagatcttacaaagtcctcaa
ggccaacagcttcagcagttaatacaaactttacagctacagcagcagaagcctcagcct
tcgattctgcaggccctggacgctggtcttgttgtgcaattgcaggctctcacagcacag
ctcacggctgcagctgccgcagccaacaccctgaaccccttggaacagggagtggctttc
aacaagaagttgatggataggtttgattttggggaagattctgagcatagtgaagaaccc
aaaaaggagatttcagcctctcaactttctcatgtttcagaatctgtgaacaattccatt
tttcatcagatagctgaacaactacagcagcaaaaccttgaacatctcagacagcagctc
ctagaacagcaacagcctcaaaaggcaacccctcaggatagtcaggagggaacatttgga
tcagagcattctgcctcaccatcacaagggagcagtcagcagcatttccttgaacctgag
gcgaatttggatgattctatagatattcagcaacaggatatggatattgatgaagggcaa
gatggagtggaagaggagatctttgaacaagaggcaaagaaagtggctgttcgctcaaga
tcaagaacacattcacgatctcgttcaagatcacccagaaaacgaaggtctcggtcacgg
tctggttctcgaaaacgtaaacacagaaagcgatcgcgctcacgctctagagaaagaaag
aggaagtcatcacgttcctactcaagtgaaaggagagcgagagaaagggagaaagaacgg
cagaagaagggattgcctccagttcgctcgaaaacattgagtgtatgtagtactactttg
tgggttggtcaggtggataagaaggcaacccagcaagatttaaccaatctgtttgaagag
tttggacaaattgaatccattaatatgattcctcccaggggctgtgcttatgtctgcatg
gttcatcgacaagatgcttttcgggctcttcagaaacttagttccggatcatataaaatt
gggtctaaggtcattaagattgcttgggctttaaacaaaggtgtaaaaacagaatataaa
caattctgggatgtggatcttggagttacatatataccatgggagaaagttaaagtggat
gacttggaaggttttgcagaaggaggcatgattgaccaggaaactgtaaatactgagtgg
gaaactgtgaaaagctcagaacccgttaaagagacggtccagacaactcagagcccaact
ccagttgaaaaagagacagtggtcacaacccaggcagaggtttttcctccacctgttgct
atgttacagattccagtagcgccagcggtgcctgcagttagtctagtcccaccagcattt
cctgtctcaatgccggttcctcctcctggattcagtccaatccctccaccaccttttctg
cgagcgagtttcaacccttcacagccacctcctggtttcatgccacctccagttccacca
cctgttgtaccaccgcccaccattccaccagtagtaccaacatctttagtgcagccgcca
ttatccatgactccagaaactgtgaaagatgttggatttggtggtcttgttttaccgggt
ggttctgttgccagcaatcttgctacttccattctgccagccggaaatgtttttaatcct
ccaactaaacaaggagagcctgaagaaaaagtacctcatcttatagaccaccagattcct
tctggcgaaaataccagatcagtgattccaaatgatattccaagtagccctgcaatgtta
ggaggacagccaccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaat
gtatcgagtaattctgaaattattggaatccgaccatctaatgtttccagtagttctggg
atgattggagcccagccaccaaatattctaaataactctggaattttgggactacagcca
ccaactgtgtcaagtagttctggacttttgggagtgctccccccaaatatccctaataat
tctggacttataggagtacagccaccaaatgttccaaatgccgctggacttttgggaaca
caaccaccagctgggcctcaaaacttaccccctttaaatctctctaatcaaaggatgcct
gcaatgccaatgttagacattcgtccaggactaatgccacagacacctggacccagattc
cctttaatacagcctggaattccaccccaacggggaatccctcccccatcggtactggac
tcacctcttcatccaccaccccgtggtccttttcctccaggagatatttttagtcagcca
gaaagaccttttctagttcctggaagacaaagtgtagacaatgttactaatccagaaaaa
aggataccacttgggaatgataacattcaacaggaaggagatagagattaccggtttcct
cccattgaagccagggaaagcattagtagacctcccccagtggatgttagggaagttgtt
ggacggcctatagatccaagagaaggtcctggaaggcctccattagatggtagggatcat
tttggaagacctccagtcgatattagagagaatcttgtaaggccaggcatagatcatctt
ggtcgaagagaccactttggctttaatccagagaagccctgggggcatagagattttgat
gagagagaacatcgggttctacctgtctatggtggtccaaaaggcttacatgaagaaaga
ggtagatttcggtctggaagctatcgatttgatcctagaagtggtccttggaacagagga
tttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaaagg
gatagggatgacagagattttgatttctgcagagaaattaatggaaaccgtcttggacga
gatagaattcagaacacctgggtcccccctcctcatcctcgggtttttgatttttttgaa
ggggccacttctcaacgaaaaggtgataacgtgcctcaggttaatggtgaaaatactgag
agacatgcccagccaccacctttaccagtacagaatgatcctgaactttatgaaaaactg
acatcttcaagtgaaataaacaaggagaagagtgacacagttgctgatatagaaagtgaa
ccagtggtagaaagcacagaaactgaggggacataa
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