Mustela nigripes (black-footed ferret): 132018414
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Entry
132018414 CDS
T09425
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03082
ATP-dependent chromatin remodeling
mnp04714
Thermogenesis
mnp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132018414 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
132018414 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
132018414 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mnp03000
]
132018414 (ARID1B)
03021 Transcription machinery [BR:
mnp03021
]
132018414 (ARID1B)
03036 Chromosome and associated proteins [BR:
mnp03036
]
132018414 (ARID1B)
Transcription factors [BR:
mnp03000
]
Eukaryotic type
Helix-turn-helix
ARID
132018414 (ARID1B)
Transcription machinery [BR:
mnp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132018414 (ARID1B)
Chromosome and associated proteins [BR:
mnp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132018414 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
TFIIA
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
132018414
NCBI-ProteinID:
XP_059257308
LinkDB
All DBs
Position
5:139502028..139941467
Genome browser
AA seq
2388 aa
AA seq
DB search
MLGGGGDGGGLNNVHHHPLHPRHELNMAHNASAAAAAASTNSAKSGGSEAALKEGGSAAA
LSSSSSAAAAASSSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHH
HAHHLHHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHPISNNNSLGGA
GGGAAQPGPDMEQPQHGGAKDSAAGSQADPPGQPLLSKPGDEDDAPPKMGEPAGGRFEHP
GLGALGAQQPPVAVPGGGGGGGGGGSGPAAVSEFNNYYGSAAPASGGPGGRTGPCFDQHG
GQQSPGMGMMHSASAAAGAPNSMDPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGG
GGGGGGGGSGGGGGGGGAGAGAVAAAAAAAAAAAAGGGGGGGGGYGGSSSGYGVLSSPRQ
QGGGMMMGPGGGGAASLSKAAAGAAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSY
GGSYPDYSSPSAPPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAA
AQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGP
PGPQRYPISIQGRTPGAMGGMQYPQQQMPPQYGQQGVSAYCQQGQQPFYNQQPPPPHLPP
QAQYLPAQAQQRYPPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLTS
EDTAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSI
PGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSPHPALSQSPMSQERG
FMAGTQRNPQMSQYGPQQTGPPMSPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQG
NYSRPPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGAMPLGRMPSAGMQNRPFPG
NMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRPPYIRSPAYPS
QSGAGGRPMFSSQHPNYGNSQAPMMHQPDQYGQGSFPGMNQSGLMASSSPYSQSVNNSSG
LMNTQAPPYSMTPNMVNSSADMMSPGDSKLPVPLKADGKEEGTPQPESKSKDSYSSQGIS
QPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVY
ELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKK
WRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTTDTKKQPKLQPP
SPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTVSVHDPFS
DASDSSFPKRNSMTPSAPYQQGLSMPDVMGRMPYEPNKDPFGGMRKVPGNSEPFMTQGQM
PTSSMQDMYNQSPSGAMSSLGMGQRQQFPYGAGYDRRHEPYGQQYPGQGPPSGQPPYGGH
QPGLYPQQPNYKRHMDGMYGPPAKRHEGDVYNMQYGSQQQELYNQYGGSYSGPDRRPMQG
QYPYPYNRERMQGPAQMQPHAIPPQMMGGPMQSSSSEGPQQSMWATRNDLPYPYQSRQGP
GGPGQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQPYMSSPASMQPITRPPQSSYQ
TPPSLPNHVSRAPSPASFQRSLESRMSPSKSPFLPSLKMQKVLPTVPTAQVTGPPPQPPP
IRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINIL
LYDDSTVATFSLSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPSQKALDHNTVKRDAS
QSWADDSGQEEEEAACVEEEEADEEDEEDDSGKTETEEESGAALASPGAPADAEEKPRQA
SKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIP
PRRRPPPPGSSTGRKKEQEGRGEADEQQEKSIIATIDDVLSARPGALPEDAHPGAQTESS
KFPFGIHQARSHRNIKLLEDEPRSRDETPLCTVAHWQDSLAKRCICVSNIVRSLSFVPGN
DAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEDGEHEGAARSKAEWWWDCLEVLR
DNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRL
VLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSTALLSNLAQG
DALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLLHMQPPPLEPPSVDMMCRAAKA
LLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atgctggggggcggcggcgacggcggcggcctgaataatgtgcaccaccaccccctgcac
ccccgtcacgaactgaacatggcccataacgcgagcgcggcggccgccgccgccagcacg
aacagcgccaagagcggcggctccgaggcggctctcaaggagggtggaagcgccgccgcg
ctgtcctcctcctcctccgcggcggcggcggcgtcctcctcttcctcctcgtcgggcccg
ggctcggctatggagacggggctgctccccaaccacaaactgaaaaccgttggcgaagcc
cccgccgcaccgccccaccagcagcaccaccaccaccaccatgcccaccaccaccaccac
catgcccaccacctccaccaccaccaccacgcactacagcagcagctaaaccagttccag
cagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcagcag
cagcagcaacagcagcagcagcaacatcccatttccaacaacaacagcctcggcggcgcg
ggcggcggcgcggctcagccgggtcccgacatggagcagccgcaacatggaggcgccaag
gacagtgccgcgggcagccaggccgaccccccgggccagcctctgctgagcaagcccggc
gacgaggacgacgcgccgcccaagatgggggagccggcgggcggccggttcgagcacccg
ggcctgggcgccctgggcgcgcagcagccgccggtcgccgtgcccgggggcggcggcggc
ggtggcggcggcggcagcggcccggcagccgtctcggagtttaataattactatggcagc
gctgcccctgctagcggcggccccggcggccgcactgggccttgctttgatcaacatggc
ggacaacaaagccccgggatggggatgatgcactccgcctctgccgccgccggagccccc
aacagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaaccat
tatccgggctacagcaggcccagcgcgggcggcggcggcggcggcggcggcggcggcgga
ggaggaggaggaggaggaggaggcagcggaggaggaggaggaggaggaggagcaggagcg
ggagctgtggcggcggcggccgcggcggcggcggcagcagcagcaggaggcggcggcggc
ggcggcggcggctatgggggctcgtcctcggggtacggggtgctgagctccccccggcag
cagggcggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagcaaggcg
gccgccggcgcagcggctgggggcttccagcgcttcgccgggcagaaccagcacccgtcg
ggggccactccgaccctcaaccagctgctcacctcgcccagccccatgatgaggagctac
ggcggcagctaccccgactacagcagccccagcgcgccaccgccgccgccgccgtcgcag
ccccagtcccaggcggcggcggcgggggcggcggcgggcggccagcaggcggccgcgggc
atgggcttgggcaaggacatgggcgcccagtacgccgctgccagcccggcctgggcggcc
gcgcaacaaaggagccacccggcgatgagccccggcacccccggcccgaccatgggcaga
tcccagggcagcccaatggatcccatggtgatgaagagacctcagttgtacgggatgggc
agtaaccctcattctcagcctcagcagagcagcccttacccaggaggctcctacggcccc
ccaggcccacagcggtatccaatcagcatccagggtcggacccccggggccatgggagga
atgcagtacccacagcagcagatgccccctcagtacggacagcagggggtgagtgcctac
tgccagcagggccagcagcctttctacaaccagcagccgccgcctccgcacctccccccg
caggcccagtacctgccggcccaggcccagcagaggtacccgccacagcaggacatgtct
caggaaggctatggaactaggtctcaacctcctttggctcctggaaaacctaaccatgaa
gacttgaacttgatacaacaagaaagaccatcaagtttaccagttgaagtcttgacctcg
gaggataccgcctttggactcaaggacctgtctggctccatcgatgacctccccacggga
acggaggcaactctgagctcagcagtcagtgcgtctggatccacgagcagccaaggggat
cagagcaacccggctcagtcacctttctctccacacgcatccccccatctctccagcatc
cctgggggcccatcgccttctcccgtcggctctcctgtgggcagcaaccagtcccgatct
ggcccgatttctcctgctagtattccaggcagtcagatgcctcctcagccacccgggagc
cagtcagaatccagcccccatcctgccttgagccagtcaccaatgtcacaggaaagaggt
tttatggcaggcacacaaagaaacccccagatgtctcagtatggacctcaacagacagga
ccacccatgtcgcctcatccttctcctggaggccagatgcatcccggaatcagtagcttt
cagcagagtaactcaagtgggacttacggtccacagatgagccagtatggaccacaaggt
aactactccagacccccaacgtatagcggggtgcccagtgcaagctacagcggcccgggg
cccggcatgggcatcaatgccaacaaccagatgcatggacaagggccaagccagccatgt
ggtgctatgcccctgggacgaatgccatcagctgggatgcagaacagaccatttcctgga
aatatgagcagcatgacccccagttctcccggcatgtctcagcagggagggccaggaatg
gggccgccgatgccaaccgtgaaccgtaaggcacaggaggcagccgccgcagtgatgcag
gccgctgcaaactcggcccagagcaggccaccatacattaggtcgcctgcttatcccagc
cagtctggggctgggggacgccccatgttttcttcccagcaccccaactatggcaactct
caggctcccatgatgcaccagcctgaccagtacgggcaaggcagttttcccggcatgaat
cagagtggacttatggcttccagctctccctacagccagtccgtgaacaacagctctggg
ctgatgaacacccaggcacccccctacagcatgacgcccaacatggtgaacagctcagca
gatatgatgtctcccggggactccaagctgcccgtgcccctcaaggccgacgggaaagaa
gaaggcactccgcagcccgagagcaagtcgaaggatagctacagctctcagggtatttct
cagcccccaacccccggcaacctgccagtcccttccccaatgtcccccagctctgctagc
atctcctcatttcatggagatgaaagcgatagcattagcagcccaggctggccaaagact
ccatcaagccctaagtccagctcttccaccaccactggggaaaagatcacaaaggtgtat
gagttggggaatgagccagagagaaagctatgggtcgacagatacctcaccttcatggaa
gagagaggctcgcccgtctcgagtctgcccgccgtgggcaagaagcccttggacctgttc
cggctctacgtctgcgtcaaagagatcggaggtttggcacaggttaataaaaacaagaag
tggcgtgagctggcaaccaacctaaatgttggcacttcaagcagcgcggcaagctccctg
aaaaagcagtatattcagtacctgtttgcctttgagtgcaagatagagcgtggggaggag
cccccgccggaagtcttcagcacgacagacaccaagaagcagcccaagctccagccgccc
tctcctgctaactcaggatccttgcaaggtccacagaccccccagtccactggcagtaac
tcgatggcagaagttccaggtgacctgaagcccccgaccccagcctccacccctcatgga
cagatgaccccgatgcaaggtggaagaagcagcacggtcagtgtgcacgacccgttctct
gacgccagcgactcgtcgttcccgaagcggaactccatgactccgagcgccccgtaccag
cagggcttgagcatgccggacgtgatgggaaggatgccctacgaacccaacaaggacccc
ttcggtggaatgagaaaagtgcctggaaatagtgagccctttatgactcaaggacagatg
cccactagcagtatgcaggacatgtataaccaaagtccctctggagcgatgtccagtctg
ggcatggggcagcggcaacagtttccctatggagccggttacgatcgaaggcatgaacct
tacgggcagcagtacccaggccaaggccctccctcaggacagccgccatatggaggacac
cagcccggcctgtatccgcagcagccgaattacaaacgccatatggacggcatgtacggg
cctccagccaagcggcacgagggagacgtgtacaacatgcagtacggcagccagcagcag
gagctgtacaaccagtacgggggctcctactcgggcccggacaggaggcccatgcagggc
cagtatccgtacccctacaacagggagcggatgcagggcccggcgcagatgcagccgcac
gccatcccgccgcagatgatgggcggcccgatgcagtcgtcctccagcgaggggccgcag
cagagcatgtgggcgacgcgcaacgacctgccttacccctaccagagccggcagggcccc
ggcggccccggccaggcgccgccctacccaggcatgaaccgcacggatgatatgatggta
cccgatcaaaggatcaaccacgagagccagtggccttctcacgtcagccaacgtcagcct
tatatgtcctctcccgcctccatgcagcccatcacgcgcccgcctcagtcatcctaccag
acgccgccgtcactgccaaaccacgtctccagagcccccagccccgcctccttccagcgc
tccctggagagccgcatgtcccccagcaagtctccctttctgccttctctgaagatgcag
aaggtcctgcccaccgtccccacggcccaggtcacagggccgcccccccagccacccccc
atccgaagggagatcacctttccccctggctccgtcgaggcatcacagccagtcttgaaa
caaaggcgaaagattacctcaaaagatatcgttactcctgaggcctggcgtgtgatgatg
tcccttaagtcaggtcttctggctgaaagtacttgggctctggacactattaacatcctc
ctatacgatgacagcaccgtcgccaccttcagtctctcccagttgtccggatttctcgaa
cttttagtagagtactttagaaaatgcctaattgacatttttgggattcttatggaatat
gaggtgggcgaccccagccaaaaagcccttgaccacaacacggtgaagagagacgccagc
cagtcgtgggccgacgattccgggcaagaggaggaagaggccgcgtgtgtcgaggaggag
gaggccgacgaggaggacgaggaggacgacagcgggaagaccgagacggaggaggagagc
ggcgcggctctggcctctcccggcgcccccgcagacgccgaggagaagcccaggcaagcg
agtaagttcgacaagctgccgataaagatcgtcaagaagaacaacctgttcgtggtcgac
cggtccgacaagctgggccgcgtgcaggagttcagcagcgggctcctgcactggcagctc
ggcgggggcgacaccaccgagcacatccagactcactttgagagcaagatggaaatccct
cctcggcggcgtccgccgccccccgggagctccacgggcaggaagaaggagcaggaaggc
agaggcgaggctgacgagcagcaggagaagagcatcatcgcgaccatcgacgacgtcctg
tccgctcggccgggggcgctgccggaagacgcgcaccccggtgcccagaccgagagcagc
aagttccccttcgggatccaccaagccagaagtcaccggaacatcaagctgctggaggac
gagccacggagccgagacgagactcctctctgcaccgtcgcgcactggcaggattctctg
gccaagcgctgtatctgcgtgtcgaatattgtccgtagcttgtcttttgtgcctggcaac
gacgccgaaatgtccaaacatccaggcttggtgctgatcctggggaagctgatccttctt
caccacgagcatccggagagaaagcgagcgccgcagacctacgagaaagaggacggcgag
cacgagggggcggcccgcagcaaggctgagtggtggtgggactgcctggaggtcttgagg
gacaacacgctcgtcacgttggccaacatttccgggcagctggacttgtctgcttacaca
gaaagcatctgcttgccgattttggatggcttgctgcactggatggtttgcccgtcggca
gaggcacaagacccctttcccacggtgggacccaactctgtcctgtcgcctcagagactc
gtgctggagaccctctgcaaactcagcatccaggacaataacgtggacctgatcttggcc
acgcctccatttagtcgtcaggagaaattctatgctacgttagttaggtacgtgggagat
cgcaaaaacccagtctgtcgagaaatgtccacggcgctcttatcgaacctggcccaaggg
gacgcgctggcagcacgggcaatagctgtgcagaaggggagcattggaaacttgataagc
ttcctagaggacggggtcaccatggcccagtaccagcagagccagcacaacctcctgcac
atgcagcccccgcctctagaaccgccgagcgtggacatgatgtgcagggcggccaaggct
ctgctggccatggccagggtggacgagaaccgctcggagttcctcctgcacgagggccgg
ttgctggacatctcgatatccgccgtcctgaactctctggtcgcgtctgtcatctgtgac
gtactgtttcagatcgggcagttatga
DBGET
integrated database retrieval system
