Mustela nigripes (black-footed ferret): 132018447
Help
Entry
132018447 CDS
T09425
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04120
Ubiquitin mediated proteolysis
mnp04137
Mitophagy - animal
mnp04141
Protein processing in endoplasmic reticulum
mnp05012
Parkinson disease
mnp05014
Amyotrophic lateral sclerosis
mnp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132018447 (PRKN)
04120 Ubiquitin mediated proteolysis
132018447 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
132018447 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
132018447 (PRKN)
05014 Amyotrophic lateral sclerosis
132018447 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
132018447 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mnp04131
]
132018447 (PRKN)
04121 Ubiquitin system [BR:
mnp04121
]
132018447 (PRKN)
03029 Mitochondrial biogenesis [BR:
mnp03029
]
132018447 (PRKN)
Enzymes [BR:
mnp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
132018447 (PRKN)
Membrane trafficking [BR:
mnp04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
132018447 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
132018447 (PRKN)
Xenophagy
Other xenophagy associated proteins
132018447 (PRKN)
Ubiquitin system [BR:
mnp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
132018447 (PRKN)
Mitochondrial biogenesis [BR:
mnp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
132018447 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
132018447
NCBI-ProteinID:
XP_059257373
LinkDB
All DBs
Position
5:complement(142973522..144269389)
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVESDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLAVQSCD
LDQQSIVHVVLRPWREDQKGEAPGQDGPRDTTVGSEREPESLTRVDLSSSVLPSRSGGLA
VILSSDDTGTLPAQRPAGRRTYNSFYVYCKGPCRRVQPGKLRVQCSTCRQATLTLAQGPS
CWDDVLIPNRMTGKCQSAHCSGTTAEFFFKCGAHPTSDKDPSVALNLITTNSRDITCITC
TDVRSPVLVFQCNHRHVICLDCFYLYCVTRLNDRQFIPDPQLGYSLPCVAGCPNSLIKEL
HHFRILGEEQYNRYQQYGAEECVLQMGGVLCPSPGCGAGLLPEPGMRKVTCEGGSSLGCG
FVFCRDCKEAYHEGECGTLFEASGAVPQAYRVDQKAAEQARWEEASKETIKKTTKPCPRC
HVPVEKNGGCMHMACPQPQCGLQWCWACGCEWNRACMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggtttcccagtggaggtcgagtcggac
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagctgaccag
ttgcgtgtgattttcgccgggaaggagcttcggaatgacttggcggtgcagagctgtgac
ctggaccagcagagcatcgtccatgtggtgctgagaccctggagggaagaccaaaaaggg
gaggcccctggacaggacggcccacgagacaccacggtgggctcggagagggagccggag
agcttgacgcgcgtggacctcagcagctccgtcctgccgtcccgctcagggggtctggcc
gtgatcctgagcagtgacgacaccggaaccctgccagctcaaaggccagcaggtagacga
acctacaacagcttttatgtctattgcaaaggcccctgtcggagagtgcagccaggaaaa
ctccgggtacagtgcagcacctgccgacaggccacgctcaccttggcccagggtccgtct
tgctgggatgatgtcttaatcccaaaccggatgaccggaaaatgccagtctgctcactgc
tctgggactacagccgaatttttctttaaatgtggagcacacccgacctccgacaaggac
ccgtcagtcgctttgaacctgatcacaacaaacagtcgagacatcacctgcatcacgtgt
accgacgtcaggagccctgtcctggttttccagtgcaaccaccgccacgtgatttgctta
gactgtttctacttatactgtgtgacaagactgaatgaccgccagttcatccctgaccct
cagcttggctactctcttccttgtgtggctggctgccccaactccttgattaaagagctc
catcacttcaggattcttggagaagagcagtacaaccggtaccagcaatatggcgctgaa
gagtgtgtgcttcagatggggggggtgctgtgccctagccctggctgcggagcagggctg
cttccagagccgggcatgaggaaggtcacttgtgaaggaggcagcagtctgggctgtggg
ttcgtcttctgccgggactgtaaggaggcgtaccatgaaggtgaatgcggcaccctcttt
gaagcctcaggagcagttcctcaggcttaccgagttgaccagaaggccgcggagcaagcc
cggtgggaagaggcctccaaagaaacgatcaagaaaaccaccaagccctgtcctcgctgc
catgtgcccgttgagaaaaatggaggctgcatgcacatggcgtgtccgcagccgcagtgc
gggctgcagtggtgctgggcctgcggctgcgagtggaaccgcgcctgcatgggggaccac
tggttcgacgtgtag
DBGET
integrated database retrieval system
