Mustela nigripes (black-footed ferret): 132019654
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Entry
132019654 CDS
T09425
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132019654 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnp03041
]
132019654 (PRPF40B)
Spliceosome [BR:
mnp03041
]
Complex A
U1 snRNP components
U1 related factors
132019654 (PRPF40B)
Complex B
132019654 (PRPF40B)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
132019654
NCBI-ProteinID:
XP_059259029
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All DBs
Position
6:84784213..84805041
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AA seq
894 aa
AA seq
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MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
MPPILPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPLRALW
SEHVAPDGRVYYYNADDKQSVWEKPSALKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDDLEALVKQEAAGKQPQQPQILQPQPPQPQPEPPPGPPGPTPVPLGLLEPE
PGGSEDCDMSEAAHPVEQGFLQQPEEGPSSAAGQHQPPQQEEEESKPEPERSGLSWSNRE
KAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKE
EARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFF
LAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDK
EDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWM
ELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNT
AFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSML
RQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREYLQVLETECQHLHTKGRKH
GRKGKKHHRKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAA
LGGRGSPSSRLLLGSDHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESDEKEPEQ
DKDRELRRAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccaggaattcccccaccatttcctccg
atgggactaccccccatgagtcagagaccaccagccatccccccaatgccgcctggcatc
atgcccccaatacttccaccaatgggggcgccaccaccactcacgcagataccaggaatg
gtacctcccatgatgccaggaatgctgatgccagcggtgcctgtcactgcagcgacggct
ccgggtgcggacacagccagctctgctgtggctgggacaggccctctgagggccctgtgg
agtgagcatgtggctcctgatggacgcgtctactactacaatgctgacgacaagcagtct
gtgtgggagaagcccagcgctctcaagtccaaggcagagttgctgctgtcccagtgcccc
tggaaagagtacaagtcagacacgggcaaaccttactactataacaaccagagtaaggag
tctcgctggacccggcccaaggacctggatgacctggaggctctagtcaaacaagaggct
gcagggaaacagccacagcagccccagatcttgcagccgcagccacctcagccccagcct
gagcccccacctgggccacctggtcccacccctgtgcccctgggccttctagagcctgag
ccaggtgggagtgaagattgtgatatgtcagaggccgcccatcctgtggagcagggtttt
ctgcagcagccagaggagggccccagcagtgctgctggacagcatcagccaccacagcag
gaggaagaggaatcaaagccagaaccagagaggtctggcctcagttggagcaaccgggag
aaggcaaagcaggccttcaaggagctgctgagggacaaggctgtcccctccaatgcctcg
tgggaacaggccatgaagatggtggtcaccgacccccgttacagtgccttgcccaaactg
agtgagaaaaagcaggcattcaatgcctacaaggcgcagcgggagaaggaggagaaggaa
gaggcccggctaagggccaaggaggccaagcagaccttgcagcatttcctggagcagcac
gaacgcatgacctctaccacccgctaccggcgggcagaacagacctttggggagctggag
gtgtgggctgtggtccctgagagggatcgaaaagaggtttatgatgatgtcctcttcttc
ctggccaagaaggagaaggaacaggccaagcagctccggcgccgcaacatccaggccctg
aagagcatcctggatgggatgagtagtgtcaacttccaaactacatggtcccaggcccag
cagtacctcatggataaccccagctttgctcaggaccaccagctgcagaacatggacaag
gaagatgcactgatctgctttgaggagcacatccgagcgttggagagggaggaggaggag
gagcgggagcgggcccgccttcgggagcggcgtcagcaacgcaagaaccgggaggccttc
cagaccttcctggacgagctgcacgagacagggcagctgcactctatgtccacctggatg
gagctgtacccagcggtcagcactgatgtccgctttgccaacatgctgggccagccgggc
tccacccctctggacttgttcaagttctatgtggaggagttgaaggcacgattccatgat
gagaagaagatcattaaggacattcttaaggaccggggcttctgcgtggaggtgaacaca
gcctttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggacgcg
ggcaacatcaagctgaccttcaatagtctgctggagaaggcagaggcgcgggagagagag
cgggagaaggaggaggcacgaagaatgcggcgcagggaagctgccttccgaagcatgctg
agacaggccgtgcctgccctggagctgggcactgcctgggaagaggtccgtgagcgcttt
gtgtgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttccgc
gagtacctgcaggtactggagactgaatgccagcatctccacaccaaaggccgaaaacac
ggcagaaagggcaagaagcaccatcggaagcgttcccactcaccctcaggctcggagtca
gaagaggaggagctgcccccgccatctctccgacccccaaagcggagaaggcggaacccc
tcggagtcaggctctgagccctcttcctcacttgattcggttgaaagtgggggtgctgcc
cttggaggacggggctccccatcttctcgccttctccttggatcagatcatggccttcgg
aaagccaagaaaccaaaaaagaaaactaagaagagaagacacaagtcgaacagtcctgag
agcgagacagaccctgaggagaaagctggcaaggagagtgatgagaaagaaccagaacag
gacaaggacagggagctgcggcgggcggaactccctaaccgctccccaggttttggaatc
aagaaggagaagacgggctgggacacgtcggaaagtgagctgagcgagggtgagctggaa
aggcggcggcggacactcctgcagcagctggatgatcaccagtga
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