| Entry |
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| Symbol |
UPF2
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| Name |
(RefSeq) regulator of nonsense transcripts 2 isoform X1
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| KO |
| K14327 | regulator of nonsense transcripts 2 |
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| Organism |
mnp Mustela nigripes (black-footed ferret)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:mnp00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132020183 (UPF2)
03015 mRNA surveillance pathway
132020183 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:mnp03019]
132020183 (UPF2)
Messenger RNA biogenesis [BR:mnp03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132020183 (UPF2)
mRNA cycle factors
P-body specific factors
132020183 (UPF2)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6:137152948..137262220
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| AA seq |
1272 aa
MPAERKKPASMEEKETLLNNKEKDCSERRPVSSREKPKDEIKLTAKKEVIKVPEDKKKKV
EEDKRKKEDKDRKKKEEEKVKAEEELKKKEEEEKKKHEEEEKKKQEEQAKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLNFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKDSNKDDSKETKEPKDNKEVSNPDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRSCI |
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| NT seq |
3819 nt +upstreamnt +downstreamnt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaaactttactaaacaac
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagatgag
atcaagcttactgccaagaaggaggttattaaggtccctgaagataaaaagaagaaagtg
gaagaagataagagaaaaaaagaagacaaggaccgaaagaaaaaagaagaagaaaaggta
aaggcagaggaagaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaggaa
gagaaaaagaagcaagaagagcaggcaaaacgtcagcaagaagaagaagctgcccagttg
aaagagaaagaggaatcccttcagcttcatcaggaagcctgggaacgacatcagttaagg
aaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agccgactagactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactatt
acggaacaacagagagactccttgtctcatgattttaatggcctaaatttaagcaaatac
attgcagaagctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaactgt
gctgtgcacttgtgctctctctttcaccagcgttatgccgacttcgctccatcacttctt
caggtttggaaaaaacattttgaagcgaggaaagaagagaaaacgcctaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgataag
gaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgatcgggaatcc
catactcatgtttctgtggtgattagtttttgtcgacattgtggagatgatatagctgga
cttgtgccacggaaagtgaagagtgctgcagagaagtttaatttgaattttcctcctagt
gagataattagtccagagaaacaacaacctttccagaatcttttaaaagaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagcttcagaatactgagagacaaaac
aggcgtattctccattctaaaggggagctaagtgaagatagacataaacagtatgaggaa
tttgctatgtcatatcagaagctgctggcaaattctcaatccttagcagacctcttggat
gaaaatatgccagatcttcctcaagacaaaccaacaccagaagagcatgggcctggaatt
gatatttttacacctggtaagcctggagaatatgacttggaaggtggtatatgggaagat
gaagatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatc
ttgtttaaagataatgagaaaagttgtcagaataaagattccaacaaagatgattccaaa
gagacaaaagaacctaaagataataaggaagtatcaaatcctgatgatttggaactcgag
ttggagaatctagaaattaatgatgacaccttggagttagagggtggagatgaagctgag
gatctcacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctccagcagttgcccaactgtgtcaaccga
gatctgatagacaaggcagcaatggatttttgcatgaacatgaatacaaaagcgaatagg
aagaagttggtacgggcactctttatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgttttattggagaattaactaaatttaagatgttcacaaaa
aatgatacattacattgtttaaagatgcttctatcagacttttcccatcaccatattgaa
atggcatgtactctactagaaacctgtggaagatttcttttcagatcaccagaatcacac
ctgaggaccagtgtacttttggagcaaatgatgagaaagaaacaagcaatgcatctcgat
gcaagatatgttacaatggtggagaatgcatattactactgcaacccacctccagctgaa
aaaacagtgaaaaagaaacgtcctcctctccaggagtatgtccggaaacttttgtacaag
gatctctccaaagttaccactgagaaggttttgagacagatgcgaaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaatatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggcctggtcctctaccaagaagatgtt
ggaatccatgttgtagacggagttttagaagatattcgattaggaatggaggttaaccag
cctaaatttaatcagagacgcatcagcagtgccaagttcttaggggaactttataattat
cgaatggtggaatcagctgtcatttttagaactctttattcttttacttcatttggtgtt
aacccagatggctctccaagttcactagatcctcctgaacaccttttcagaattagacta
gtgtgcactattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaa
cttgattgcttccttgtatactttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgacatagattacatgatcagtgatacactagaa
ctgctaagaccaaagatcaaactctgtaactctctggaagaatccatcaggcaggtacag
gacttggaacgagaattcttaatcaaactaggcctagtaaatgacaaagattcaaaagat
tccatgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaa
acagaagaacaatctggaaatgaaagtgaagtaaatgaaccagaagaagaggagggttct
gataatgatgatgatgaaggtgaggaggaagaggaagagaataccgattaccttacagac
tccaataaagaaaatgaaactgatgaagaaaatactgaggtaatgattaagggaggtgga
cttaagcatgtaccttgtgtggaagatgaggacttcattcaagctctggataaaatgatg
ctggaaaatcttcagcaacgaagtggagaatctgttaaagtgcaccaactagatgttgct
attcccttgcatctcaaaagccagctgaggaaagggcctccactcggtggtggggaggga
gaggcagagtctgcagacacaatgccgtttgtcatgttaacaagaaaaggcaataaacag
cagtttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcactggaaccag
caacaggcagaacaagaagaaaggatgagaatgaaaaagctcactttagatatcaatgag
cggcaagagcaagaagattatcaagaaatgctgcagtctcttgcccagcgcccagctcca
gcaaacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcacctaatgcg
gatctaatctttaagactggtgggaggtcctgtatctga |
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