KEGG   Mustela nigripes (black-footed ferret): 132020361
Entry
132020361         CDS       T09425                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
mnp  Mustela nigripes (black-footed ferret)
Pathway
mnp03420  Nucleotide excision repair
mnp04120  Ubiquitin mediated proteolysis
mnp05161  Hepatitis B
mnp05170  Human immunodeficiency virus 1 infection
mnp05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:mnp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    132020361 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    132020361 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    132020361 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    132020361 (DDB1)
   05161 Hepatitis B
    132020361 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mnp04121]
    132020361 (DDB1)
   03400 DNA repair and recombination proteins [BR:mnp03400]
    132020361 (DDB1)
Ubiquitin system [BR:mnp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     132020361 (DDB1)
DNA repair and recombination proteins [BR:mnp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      132020361 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      132020361 (DDB1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 132020361
NCBI-ProteinID: XP_059260510
LinkDB
Position
1:9939155..9971037
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcgcagaagcccaccgccgtgaacggctgcgtgacc
ggacactttacttcagctgaagacttgaacctgttgattgccaaaaacacgaggttagag
atctatgtggtcactgctgagggtcttcgccccgtcaaagaggtgggcatgtatgggaag
attgcagtcatggagcttttcaggcccaagggggagagcaaggacctactgtttatccta
acagctaaatacaacgcctgcatcctggaatataagcagagtggcgagagcattgatatc
ataacacgagcccatggcaatgtccaggaccgtattggccgcccctcagagaccggcatt
attggcatcatcgaccctgagtgccggatgattggcctgcgactctatgatggccttttc
aaggttattccgctagaccgggacaataaagagctcaaggcctttaacatccgcctcgag
gaactgcatgtcatcgacgtcaagttcttatatggttgccaggcacctaccatctgcttt
gtctaccaggaccctcaggggcggcacgtgaaaacctatgaggtgtctctccgtgagaag
gagttcaataagggcccttggaaacaggagaacgtagaagctgaagcttccatggtgatt
gcagtcccagagcccttcggaggggccatcatcattggacaggagtccatcacctaccac
aatggagataaatacctggcgattgcccctcctatcatcaagcaaagcacaattgtgtgt
cacaatcgtgtggaccccaacggttcccgctatctgctgggagacatggaaggacggctc
ttcatgctgcttctggagaaggaggaacagatggatggcaccgtcaccctcaaagatctc
cgtgtggagctcctcggagagacctctattgctgaatgcttgacatacctcgataacggt
gttgtgttcgttgggtctcgccttggggactcccagcttgtgaagctgaacgttgacagc
aatgaacaaggctcctatgtagtggccatggaaaccttcaccaatttaggacccattgtg
gacatgtgcgtggtggatctggagaggcaggggcaggggcagctggttacttgctccggg
gctttcaaggaaggttccttgagaatcatccggaatggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtctgtggccgctgcggtctgaccctaaccgggag
actgatgacactctggtgctctcttttgtgggccagacaagagttctcatgttaaacgga
gaagaggtggaagaaaccgaactgatgggtttcgtggatgatcagcagactttcttctgt
ggcaatgtggctcaccagcaactcatccagatcacttcagcatctgtgaggttggtctct
caggaacccaaagctctggtcagtgagtggaaagagcctcagggcaagaacatcagtgtg
gcctcctgcaacagcagccaggtggttgtagcggtgggaagggccctctactacctgcag
atccatcctcaggagctccggcagatcagccatacagagatggaacatgaagtggcctgc
ttggacatcaccccgctgggggacagcaatgggctgtcccctctttgtgccattggcctc
tggacagacatctcggcgcgtatcttgaagctgccctcttttgagctactgcacaaagag
atgctgggtggagagatcattcctcgctccatcctgatgaccacttttgagagtagccac
tacctcctttgtgccttgggagatggggcacttttctacttcgggctcaacattgagaca
ggcctgttgagcgaccgtaagaaggtgaccctgggcacccagcccacggtgttgaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaaattggtcttctccaatgtcaacctcaaggaagtcaactacatgtgt
cccctcaattctgatggctatcctgacagcctggcactggccaacaacagcaccctcacc
attggcaccattgacgagatccagaagctgcatatccgcacggttcccctctatgagtct
cccaggaagatctgctatcaggaagtgtcccagtgcttcggggtcctctccagccgtatc
gaagtccaggacacgagtggcggcaccacggccctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttctccagcagcacggcgccgcatgagacc
tccttcggagaggaggtggaggtgcacaacctcctcatcattgaccagcacaccttcgaa
gtgcttcatgcccaccagtttctgcagaatgaatatgccctcagcctggtctcctgcaag
ctgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtatcccgaagag
gcggagcccaagcagggtcgcatcgtggtctttcagtattccgatggaaaactacagact
gtggccgagaaggaagtgaagggagccgtgtactccatggtggaatttaacgggaagctg
ttagccagcatcaacagcacggtgcggctttatgagtggacaacagaaaaggagcttcgc
acggagtgcaatcactacaacaacatcatggccctctacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctcagtgctgctgcttgcctacaagcccatggaaggg
aactttgaagagatcgctcgagactttaatcctaactggatgagtgctgtggagatcttg
gatgatgacaatttcctgggggccgaaaatgcctttaacttgtttgtgtgtcagaaggat
agtgctgccaccaccgatgaggagcggcaacacctccaggaggtcggtctcttccacctg
ggcgagtttgtcaacgtcttttgtcacggctctctggtcatgcagaacctgggcgagact
tccacccccacgcagggctcggtgctctttggcacagtcaacggcatgattgggctggtg
acctcgctgtccgagagctggtacaatctcctgttggacatgcagaatcgactcaataaa
gtcatcaagagcgtgggcaagatcgagcactccttctggagatcttttcatactgagcga
aagacagaacccgccacgggcttcattgatggagacttgattgagagtttcctggacatc
agccggcccaagatgcaggaggtggtggcaaacctacagtatgatgatggcagcgggatg
aagcgagaggccaccgcagatgacctgatcaaggttgtggaggagctgacgcggatccat
tag

DBGET integrated database retrieval system