Mustela nigripes (black-footed ferret): 132020735
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Entry
132020735 CDS
T09425
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132020735 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132020735 (PATL1)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132020735 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
132020735 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
132020735
NCBI-ProteinID:
XP_059260872
LinkDB
All DBs
Position
1:11189072..11219468
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AA seq
771 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDERDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLPPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQVLPPAPGFRAFFSAAPPAAPPPPQQHSPGPGPHLQNLRSQAPMFRPDTTHLHP
QHRRLLHQRQQQSRNQHRSLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMM
QLQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGEGPKKERTKLITPQVAKLEHAYKPVQFE
GSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDY
ERRYLLSLEEERPALADERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVAR
ILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQL
MNLPQSAAAPAPSNPHLAAVLQNKFGLSLLLVVLSRGEDLQSSDPATESKQNNQWTEVMF
MATRELLRIPQAALAKPVSIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttagaggattgtcctctggatgaagatgaagatgcatttcag
ggcttgggagaagaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gctgttgatgatgactggcaagaagcgcatgagcgcctggctgaattggaagagaagctg
ccggtggcagttaatgaacaaacaggcaatggagaaagggatgagatggacttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtgcagaccaggccagttctgcaaccccaaccaggaagt
ctgaattccagcatctgggatgggtctgaagttctgaggcgaatccgagggccactgctt
gctcaggaaatgcctacagtatctgtattagaatatgccctgcctcagaggcccccgcag
ggtccagaagacgagcgagacctttctgagcgcgcattaccacggcggtcaacgtcacct
atcattgggagtcctcctgttagagccgtccccataggcaccccacctaagcagatggct
gtacccagcttcaaccaacagatcctgtgtccgaagcctgtccatgtccggcccccgatg
ccaccacgttaccctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaattcttccctgcttggtcaccctttccctcctagtgttcctcctgttctcagcccc
ctccagagagcacagcttcttggaggagcacagctaccgcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccgcttgctgccatgaatcccaagttg
ctgcaagggcgagtagggcaggtgcttcccccagcacctggcttccgtgccttctttagt
gctgcgccccctgccgctccgccgcctccgcagcagcactcccctggcccagggcctcac
ctgcaaaacctaagatctcaggccccaatgtttagaccagacacaactcacctccatcca
cagcaccgtcggctcttgcatcagagacagcagcagagcagaaatcagcatcgcagtctc
aatggtgctggagacagaggaagtcaccggagcagtcatcaagaccatctccgaaaggat
ccctatgccaatctcatgctgcagcgagagaaggattgggtctctaaaatccagatgatg
cagctgcaaagcactgatccctacctggacgatttctattaccagaattactttgaaaaa
ctggagaaactgtcagctgctgaagaagtacaaggcgaaggcccgaagaaggagcgcacc
aaactcattaccccgcaggtggccaaactggagcacgcgtataagccagtgcagtttgag
ggctctttgggaaagcttacagtctccagtgtgaataacccccgaaaaatgatcgatgcc
gttgtgacgtctcggagtgaggatgatgagacaaaagaaaaacaggttcgggacaagaga
cgaaaaacccttgtcataattgagaaaacctatagtttactcctggatgtggaggattat
gaaaggcggtatctcctaagtctagaagaagagcgacctgccctggcggatgaaagaaag
cacaaaatttgtagcatgtatgacaacttaagggggaaattgcctggacaagagaggcca
agtgatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgt
attcttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaat
ctcccttttcttatcaagaaggatgcacaagatgaggtgctgccatgcttactgagtccc
ttctctctgctcctgtatcaccttccgtcagtgactgtcaccagccttctgcaacagctc
atgaacctacctcaaagcgcagctgcaccagcaccctccaaccctcacctcgctgctgtg
ctccagaacaagtttggcctgtcactgctcctcgtcgtcctgagccgtggggaagacctc
cagagttcagaccccgctaccgaatcaaaacagaacaaccagtggacagaggtgatgttc
atggcaacccgagaacttctgcggattccccaagcagccctggccaagccagtctctata
cccacaaacctggtgtccctcttttctcgctatgttgaccgacagaaactgaacttgctg
gagacaaagctgcagctagttcaggggatccgataa
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