Mustela nigripes (black-footed ferret): 132021566
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Entry
132021566 CDS
T09425
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp01524
Platinum drug resistance
mnp03430
Mismatch repair
mnp05200
Pathways in cancer
mnp05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132021566 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
132021566 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
132021566 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
132021566 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132021566 (MSH6)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132021566 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
132021566
NCBI-ProteinID:
XP_059262101
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Position
7:complement(73409132..73433805)
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AA seq
1361 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNANKSSVRASGEGGGAAAAXRGLPFSRRGCGLERGRAWXPLA
GSASPPEARNVNGGLRRTAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSVRVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEVQKGGHFYSSKPEILRAMQRAD
EALNKDKIERLELAVCDEPSEPEEEEETEVGATYSSGKSEDDDHEIESEEEVRPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDGKEEGSSDEISSGVGDSDSEGLDSPVKVASK
RKKMVTGNGSLKRKSSRKEMPLATKRSTGISSETKSALNAFSAPQNSESQAHVSGGCDDN
SRPTIWYHETLEWLKEDKRRDLQRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRMLLEEGYFKEKLNEDSGVLLPQVL
KGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSA
IRPGAVFAKGNQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDSCHTPFGKRLLKQWLC
APLCSPYAINDRLDAIEDLMAVPDKISDVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEIADNFKSKILKQIITLQTKTPQ
GRFPDLTIELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLI
NAEERRDISLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLAVMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEIIQKGHRK
AREFEKMTQSLRLFREVCLASERSTLDAEAVPKLLTLIKEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtcgccagcgctgaataatgct
aataagtcctcggtcagggcttcaggtgaaggcggcggtgccgctgccgccnaccggggc
ctcccgttctcccggcggggatgcggcctggagcgaggccgggcctggnngcccttggca
ggctccgcgtcgccgccggaggcgaggaacgtcaatggagggctgcgaagaactgccgcc
cctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaagatg
gagggttacccctggtggccttgcctggtatacaaccacccttttgatggaacattcatc
cgtgagaaaggaaagtctgtccgagttcatgtacagttttttgatgacagcccaacaagg
ggctgggttagcagaaggctattaaagccatatacaggttcaaaatcgaaggaagtgcaa
aaaggaggtcatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgcagat
gaagccttgaataaagacaagattgagaggcttgaactagcagtgtgtgatgaaccctcc
gaaccagaggaagaagaagagacggaggttggtgcaacttactcatcaggtaagagtgaa
gatgatgatcatgaaattgaaagtgaagaggaagtacggcccaaggtccaaggatctagg
cgaagcagccgccaaataaagaaaagaagggtcatatcagactcggagagtgacattggt
ggttctgacgtggaattcaagccagatgggaaggaggaaggaagtagtgatgaaataagc
agtggagttggggacagtgacagtgaaggcctggacagtcctgtcaaagttgcttcaaag
cggaagaaaatggtgactggaaatggctctctcaaaaggaaaagttcaaggaaggaaatg
cccttggccaccaaacgatcaactggcatttcatcagaaaccaagagtgctttgaatgct
ttctctgcccctcaaaattctgaatctcaagcccacgttagtggaggatgtgatgataat
agtcgccccactatctggtatcatgaaaccctagagtggcttaaggaggacaagagaaga
gatctacagaggaggcgacctgatcaccctgattttgatgcatccacactctatgttcct
gaggatttccttaattcctgtactcctgggatgaggaagtggtggcagatcaagtctcag
aactttgatcttgttatattttataaggtgggcaagttttatgaactataccacatggat
gctcttattggagtcaacgaactaggactagtgttcatgaaaggcaactgggctcattct
ggtttcccagaaattgcctttggccgatattctgattctctggttcaaaagggctataaa
gtagcacgagtggaacagacagagaccccagagatgatggaggcacgatgccggaagatg
gcacatatatctaagtatgatagagtggtgaggagggagatctgtagagtcattactaag
ggtacacagacctacagtgtattggaaggtgatccctctgagaactatagtaagtatctt
cttagcctcaaagaaaaagaggaggattcttctggccacactcgggtgtatggagtatgc
tttgttgatacctcactgggaaagtttttcataggtcagttttcggatgatcgccattgt
tccagatttaggactctagtggcacactatcctccagtacaagtcttgtttgagaaggga
aatctctcaacagaaactaagatgattctaaagggttcattatcctcctcacttcaggaa
ggtctgataccaggctcccaattctgggacgcagccaaaacattgagaatgctccttgaa
gaaggatattttaaggaaaagttaaatgaggacagtggggtactgttacctcaggtgctt
aaaggtatgacctcagagtctgattctcttgggttgacaccaggagaaaagagtgaattg
gccctctctgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaagag
ctcttatcaatggcaaattttgaagaatacattcccttggattctgacatggtcagtgct
ataagacctggtgctgtttttgctaaaggcaaccagcgaatggtgctagatgctgtgaca
ttaagcaacttggagattttcatgaatggaacaaatggttctactgaagggaccctacta
gaaaagattgatagttgccatactccctttggtaagcggcttctcaagcagtggctttgt
gctccactctgtagcccttacgctatcaacgatcgtctagatgctatagaagacctcatg
gctgtgcctgacaaaatctctgatgtggtagaccttctgaagaagcttccagaccttgaa
aggctgctgagtaaaattcataatgttgggtctcccctgaagagccagaaccacccagat
agcagggctatcatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctt
tctgctctagaaggattcaaagtaatatgtaaaattatagagattatggaagaaattgct
gacaactttaagtctaaaatccttaagcagatcattactctacagacaaaaactcctcag
ggccgtttcccagatttgactatagaactgaaccgatgggatacagcctttgaccatgag
aaggctagaaagacgggactaattactcccaaagcaggatttgactctgattatgaccaa
gctcttgctgacataagagaaaatgaacagagcctcctggaatatttggagaaacagcgc
agtcgaattggctgtaggaccattgtctactgggggattggtaggaaccgttaccagttg
gaaattccagagaatttcatcactcgtaatttgccagaagagtacgagttgaaatctacc
aagaagggctgtaagcgatactggaccaaaactattgagaagaagttggctaatctgata
aatgctgaagaacggagagacatatcattgaaggactgcatgcgacgactgttctataac
tttgataaaaattataaggactggcagtctgctgttgagtgcatcgcagtattggatgtc
ttactgtgcctggctaactacagtcgagggggtgatggccctatgtgtcgtccagtaatt
ctgttgccagaagaaggtactcctcccttcttagaccttagaggatcacgtcatccctgc
atcacgaagactttttttggagatgactttatacctaatgacattctaataggctgtgag
gaagaggaggaaaatggcaaagcttattgtgtgcttgttactggacctaatatggggggc
aagtctacgctcatgagacaggctggcctattagctgtaatggcccaaaccggttgttac
atacctgctgaagtatgtaggctcacaccaattgatagagtatttactagacttggtgcc
tccgacagaataatgtcaggtgaaagtacgttctttgttgaattgagtgaaactgccagc
atacttacacatgcaacggcacattctttggtccttgtggatgaattggggagaggtact
gcaacatttgatggaacagcaatagcaaatgcagttgttaaagaacttgctgagaacata
aagtgtcgtacattgttttctacccactaccattcattagtagaagattattctcaaaat
gttgcagtgcgcctgggccacatggcatgcatggtagaaaatgaatgtgaggatcccagc
caggagactattacctttctctataaattcattaagggagcttgtcctaaaagctatggc
tttaatgcagcaaggcttgctaatcttccagaggagattattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcaatcactgcgattatttcgggaagtctgcctggct
agtgaaaggtcgactctagatgctgaagctgtccctaaattactgactttgattaaggaa
ttatag
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