Mustela nigripes (black-footed ferret): 132024509
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Entry
132024509 CDS
T09425
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
mnp
Mustela nigripes (black-footed ferret)
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mnp03036
]
132024509 (SHOC1)
Chromosome and associated proteins [BR:
mnp03036
]
Eukaryotic type
Meiosis-specific proteins
Others
132024509 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
132024509
NCBI-ProteinID:
XP_059267050
LinkDB
All DBs
Position
9:21301114..21376489
Genome browser
AA seq
1513 aa
AA seq
DB search
MFSTFKYCAIDYLYENIVRKKFCRDALLLQVPSCLYQDGNYYAGVIDNKFRRPWMRVSAV
SVWGMTDDISVLDQWKASLFVEDFLEKKTITGVVTQIDCMFEEVVPSSNPNSQTDVEEAS
LYTRKDYTEVFTLVSGLGKCPALQTQNEDLSIDEEIIFLNNLMTYKSQLPTLHTLLSRLK
LFLVKDPILDFKGQIFTEANFFRECFSFQEDLKGLVKEDFYMDKENFCQEKLEDTFCRNE
RETYLMDLPECEFLIPTSLKQNVDILSLSKLKESLNLVPEIINYADENEKLFKIDLTTKH
GIDIEDIKCSSTEILAIQKHCEPEYSEPVELEMPLTHLHLTNQHSSMTSLCTGLQTFPFS
PICKISLLTAEESANKNHMMWQLESCRSSLKPFLLTVPRTEEPNSQYSVMDLKKIFSIEE
ESLVVNLVSTEWWEKGQLNLKEAEVLEHPNMYLCHDNLSSDDTKMEIFLPTKEPQLESWL
EQKSCSSPTVLINETSTNDHLLPPQKISSLAEVSDLCFFDDNLSVKQPTKDEKPKNDLEL
VDRISQNKENEDYLELDCTVPSVEPSSSPKIDKASFKHGKKWENDLDLLSDFIALRNKYK
TCMSKTEVTGSKENDDKEHCLTLQEESPPVCTNKALEKINQERIVDNVIEIQASDSQCQA
FCLLEAAATPILKKLVCLCTLPATNWTFATVIFDQTRFLLKEQEKVISDAIQQGTNDEKE
VTFKHAALLHLLVTIRDVLLTCSLDTALGYLSNAKDIYKNILGSYLDDICRQLEIVQFIR
EKKPETNHKIQELQCQILSWMQSGQQIKVLIIIRMDSDGEKHLLIKILNKMEGLTLTVLH
SNNKRKDFLESEGVLNGKSSCVVVHNQYIGSDFPWSNFSFVVEYNFVENSCWTKHCKKLN
IPHKVFKVILPDTVLRRSTLLDSFGGFLLEIQVPYVFFASEGLLNNQEILQLLESKYNIT
LVERCCSESLKLFGGTECYVVVTVDEHTAIILQDLEELNCEKASDNIIMRLMALSFQYSY
CWIILYTKKTLNAQYRLTEKTLHHLALIYAALVSFGLKSEELDVKLIIAPGVEEAALIIR
QIADHNLMTSKRDPREWLDKSWLEVSPSKEEMYLLDFPCINPLVAQLMLNKGPSLHWILL
ATLCQLQELLPEVPEKVLKHFCSITSLFKISSSSITNSPQSPSPQENGNQTSTFTSQSLA
SGSSNSVFQGHNENYHFSDTGEAVHGDTNSSSNCNSSLMELREMPCVLPPVTSYNQASYW
KDSNFNPNIVHNPFLINTESKNVADDSFQNQNDSESDVFCLDLTQINYENIVSPIDTQKR
VAPNFINYQKKGTHDAKRHINKEVPAPSFSLEGSQSPLHWNLKKDVWEQQNHSFNLKYGA
KQTACDKWYSQENNLFTNQQKCLSDELEDFICERSNAGTKRTSWKELPSAPSLDLFCASD
PNVNQKEFSSLYFHQRAGKCLGQKRHSDSSSNSGDKKSLPDFMCSQLPQFKKRRLVYEKV
PGRADGQTRLRFF
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaacattcaaatattgtgcaatagactatttatatgagaatatagttagaaag
aagttttgcagagatgctttattgcttcaagtcccttcatgtttatatcaagatggaaat
tattatgcaggagttattgataataagtttaggaggccatggatgagagtttcagctgtt
tcggtgtggggaatgacagatgatatttcagtcttggatcaatggaaagcaagtcttttt
gtggaggattttctagagaaaaaaacaattacaggagtggtgactcagattgactgtatg
tttgaggaagttgttccaagttcaaacccaaactcccaaactgatgtagaggaagccagt
ttatatacccgtaaggattacaccgaagtctttacacttgtcagcggtttaggaaaatgt
ccagcacttcaaacacagaatgaagatttgtctattgatgaagaaataatttttttaaat
aacttgatgacctataaaagtcagctaccaactttgcatactttgttgagtaggctaaaa
ctatttttagtaaaggaccccattttagatttcaaaggacagatcttcacagaagctaat
ttcttcagggaatgtttctcttttcaagaagatttgaagggtctagtgaaagaagatttt
tacatggataaagagaacttttgtcaggaaaagctagaagatacattctgtaggaatgaa
agagaaacatatttaatggatttgcctgagtgtgaattcttaatacctacaagcctcaaa
caaaatgttgatattctgtcactctccaaactaaaggaatccttaaacttagtgccagaa
ataataaattatgcagatgaaaatgaaaagcttttcaaaatagatcttactactaagcat
ggaattgacattgaggatataaaatgcagctccacagagattttggccattcaaaaacat
tgtgaaccagagtacagtgaaccagttgagttagaaatgccattaactcatctacatcta
acaaaccaacattcttccatgacttcattatgtacaggacttcagacatttccattttct
cctatttgtaaaattagtttgcttactgctgaagaatcagctaacaaaaaccacatgatg
tggcagttagaaagctgcagaagctcactgaaaccatttctgcttacagtgccaagaact
gaagagcccaacagtcaatattcagttatggatttgaaaaagatattttctattgaggaa
gaaagcctggtagttaatcttgtgagcacagagtggtgggaaaagggacaactgaatctg
aaagaggcagaagttttggaacatccaaatatgtatttgtgtcatgataacctatcatct
gatgatactaaaatggagatatttttgccaacaaaagagcctcagttagaatcatggcta
gagcaaaaaagttgttcttcacctactgtacttattaatgagacatctacaaatgatcat
ttattacctccacaaaagatttcatctctggcagaagtatcagatctgtgtttttttgat
gacaatttatctgttaaacaaccaacaaaagacgaaaaaccaaagaatgatctagaacta
gttgatagaataagccaaaataaagaaaatgaagattacttagaacttgactgcacagta
ccatctgttgaaccatcttcctctccaaaaattgataaagcatcttttaagcatggtaaa
aaatgggagaacgatttggaccttttgagtgactttattgcactgcgaaataaatataag
acttgtatgtcaaagactgaagtcacaggcagtaaagaaaatgatgataaagaacattgt
ttgactcttcaggaagaaagtcctcctgtttgtactaataaagctctagagaaaataaat
caggaaaggatagtggataatgtcattgaaattcaagcatcagatagccagtgccaagca
ttctgtctcctagaagcagcagctactcctattttaaaaaaacttgtatgcctctgtact
ctccctgccactaattggacatttgccactgtcatttttgaccaaacaagattcctccta
aaggaacaagaaaaagtaataagtgatgctattcagcaaggtacaaatgatgaaaaagaa
gtgacgttcaagcatgctgctctcttacatcttctggtaacaattagagatgtcctttta
acatgtagcttggacacagcattgggatatttgtcaaatgcaaaagatatctacaaaaat
attttaggctcctatttagatgacatttgcagacagctggagattgtacagtttattagg
gaaaaaaagcctgaaaccaaccacaagatacaagaactacaatgtcagatactaagttgg
atgcaaagtgggcaacagattaaggtgctgattataataagaatggactcagatggtgaa
aaacatttactcattaaaatccttaacaaaatggaaggtttaacattgactgtcttacat
tcaaacaacaaaaggaaagatttcctggaatctgaaggtgttttaaatggtaaaagttcc
tgtgtagttgtgcataatcaatatattggatcagatttcccctggagtaacttctcattt
gtggtggaatataattttgtagaaaactcttgttggactaaacactgcaagaaattgaat
attcctcacaaggtcttcaaagtgattcttccagacacagttttacggagaagcaccttg
ctggatagttttggtggatttcttctggaaatacaggttccatatgtgttttttgcatct
gaaggacttcttaataatcaagaaatacttcagttgctagaatccaagtataatatcaca
ctagtggagagatgctgcagtgagtcattgaaactctttggaggtacagagtgttatgta
gtggtgacagttgatgaacacactgccataattttgcaggacctagaagaattgaactgt
gagaaggcatcagacaatatcattatgagactgatggcattatcattccagtacagctat
tgttggataatcttgtataccaaaaaaacattaaacgcacagtaccgtcttacagaaaaa
acacttcatcatctagcactgatttatgcagctttggtatcatttgggctaaaatcagaa
gaactggatgtaaagcttataattgccccaggagtggaagaggctgcactgataattcgg
caaattgctgatcacaatttaatgacctcaaagagagatcctcgtgaatggttggataaa
tcctggcttgaagtttcaccatctaaggaagaaatgtacttacttgattttccatgtatt
aacccattggtggctcagctcatgttaaataaaggaccttcactgcactggatattatta
gcaactctgtgtcaacttcaggagcttttacctgaagttccagaaaaagtattaaagcat
ttttgtagcatcacttccttattcaagattagttcttcttccataacaaactcacctcaa
agtccatcacctcaggaaaatggaaatcagactagtaccttcacctcccagagtttagct
tctggctcttcaaactctgtctttcaaggacataatgaaaattaccacttttcagataca
ggagaagcagtgcatggagacacaaacagctcttcaaactgtaactcttcccttatggaa
ctaagagaaatgccatgcgttttaccacctgtgacttcttacaatcaggccagctactgg
aaagactccaattttaaccctaacatagtgcataatcctttcctgattaatacagaatca
aagaatgtagctgatgactcctttcaaaaccaaaatgattcagagtcagatgtcttttgt
ttggatctaacacaaataaactatgaaaacatagtatcaccaattgacactcagaagaga
gttgcccctaattttataaattaccagaaaaagggaacacatgatgcaaaaagacatata
aataaagaagtgcctgcccctagcttttcactagaaggctcccaatctcctcttcactgg
aaccttaagaaagatgtatgggaacaacagaatcactcattcaacttaaaatatggtgca
aagcagactgcatgtgacaaatggtactctcaggaaaataatttattcactaatcagcaa
aaatgtttatctgatgagttagaagacttcatatgtgaaaggtcaaatgctgggactaaa
aggacatcctggaaagaattaccatctgcccccagtttggatttattttgtgcttctgat
cctaatgtaaatcaaaaagaattcagcagtctttatttccaccaaagagctgggaaatgt
ttaggacagaagaggcactcggactcctcatctaactcaggagacaagaaatcattacca
gatttcatgtgctcacaactaccacaattcaaaaaacggcgtctggtgtatgaaaaagtc
cctggtagagctgatggacaaactcgtctgaggtttttttga
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integrated database retrieval system
