Mustela nigripes (black-footed ferret): 132024825
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Entry
132024825 CDS
T09425
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132024825 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnp03021
]
132024825 (PCF11)
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132024825 (PCF11)
Transcription machinery [BR:
mnp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132024825 (PCF11)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132024825 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
132024825
NCBI-ProteinID:
XP_059267873
LinkDB
All DBs
Position
1:58312438..58335234
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQITPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLSQSDIKTSKTVPSEKLNSSKQEKSKSGEKMTKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTTEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTTTEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGIKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEGANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPTKMI
FDGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGGAMRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRYDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSSRFDNHPSQRLESVSFS
QTGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNIQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQ
NEDQNVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIAAPTEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcccattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagtcttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtatctcttagtgtt
cagcaggagacatccaacttaggtcctggatcagcaccatccaaattacatgttccacaa
attacccctatggcagttaaacctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttcgcatggaaaggatcagagtcacaggaaagaattcctaatg
aacacattgagccagtctgatattaagacaagcaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagtaaatcaggtgaaaaaatgaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccgaggttaaaaaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaaactacagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggttggaagtagaaataaaatcatcaatggcatcgtacaaaagcaggataca
acaacagaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcgatcaccaattatacattctccgaagagaagagat
aggcggtcacccaaacgaaggcagaggagtatgtctccaacttcgacacccaaagctggt
aagattcggcaatcaggaattaagcagtcacatatggaagagtttacgctaccttctagg
gaagagcgaaatgccaagagaagtaataaacaagatattcgagatccaaggagaataaaa
aagactgaagaggaacgaccacaagaaggtgcaaatcaacattctacaaagtcgggcact
gaaccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaattttgtcacctcgggccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcagtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggccttgatacaaatcagcgacttacagctttagctgaagataga
ccattatttgatggacctggtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgatggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctttgcggtttgaggggccgattggtcaagcaggaggaggtggttttcggtttgaa
ggttctcctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
ggccagcccgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtcta
aggtttgagggaccgcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgttggtggacttagatttgaaggtggtcatggtccatcagggggtgcaatgagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgaaggccctttgctacag
cagggagttggaatgaggtttgagggcccccatggtcagtcagtagccggtttgaggttt
gaaggacaacataatcagctcggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttgggatcaggtttgaaggaccgttagtccaacagggaggtggaatgaggtttgaa
ggtccttctgtgccaggaggtggcctgagaattgaaggacctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcaaccaggtcagccatctcttttg
cccagatatgatggattacatgggcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaagttcaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaagcatcaaggttcgatattcctcttggt
cttcaaagctcacgatttgacaatcatccttcacagaggcttgaatcagtatctttcagt
cagactggtccatataatgatccacctggcaatgcttttaatgccccatcccaaggacta
cagtttcaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagcttctccaatccccttaacagagcttctggacactatttt
gatgagaagaatatacagagttcccaatttggaaactttggcaatttacctgctccaata
acagtggggaatattcaggcatctcaacaggttcttactggtgttgcgcagccagtagca
tttgggcaaggacaacagtttttgcctgttcatccacaaaatcctggagcatttgttcag
aatccttcaggcggtcttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactgctaaaaacaggaattctcaaattgtctcagcctgattca
gctacaacacaagtaaatgaagttgctgctcagcctccccctgaagaggaggaagatcaa
aatgaagatcaaaatgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtggaatgagg
tttacaacatcacagacagacgtatatgcagatcacttggactggcattatcggcaaaat
agaacggaaaaagatgttagcagaaaagtcactcataggcgttggtactacagtttaacc
gactggatagaattcgaggaaatagctgatttagaagaacgtgcaaagagccaatttttt
gaaaaggtgcatgaagaagtagtgctcaaaactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaagaagaggaggaatggcatttaaagaatgctattagagta
gatggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgat
tgtacaccgtctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcagcacccactgaaattaaaacagaaaat
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
