Mustela nigripes (black-footed ferret): 132025450
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Entry
132025450 CDS
T09425
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132025450 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132025450 (SMG7)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132025450 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
132025450 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
132025450
NCBI-ProteinID:
XP_059268727
LinkDB
All DBs
Position
10:19289966..19381998
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AA seq
1215 aa
AA seq
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MRNWMFLQIVIVGENVSFKSQMRTGNLKSEEHLKSSNIRQAEVLKADMTDSKLGPAEVWT
SRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANL
SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC
QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR
SIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP
LREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQL
LALFMSFLGILCKCPLQNKSQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWP
WLISLLNSFHPHEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQ
RQIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQEPSM
VESLAADGNPGLKSVLSMGRNLSNNCDPGEKPMVTFKENIKPREVNRDQGRSFPPKEVRR
DYSKGITVTKNDGKKDNSKRKTETKKCTLEKLQETGKQSVAVQVKSQTELRKTPVSEARK
TPVTQTPSQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSV
PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQPQPPSQQPLTSLPAQP
TAQSTNQLQVQALAQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGK
IMPVKQSYYLQSQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWD
SSYSMADNRAVMAQQANMDRRGKRSPGVFRPEQDPVPRMPFEDPKGSPLLPPDLLKSLAA
LEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQE
RYPNNSVFNEVYGKNLTTSSKTELNPSLAPQETSLYSLFEGTPWSPSLPASSDHSTPASQ
SPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLS
ATSSSESSWHQASTPSGTWAGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQ
KQKQQRGQGTMNPPH
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattggatgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcc
cagatgaggaccggaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcag
gcagaagtcctgaaggctgacatgacagattctaagctgggtccggctgaggtctggaca
tccagacaggctctgcaggacctgtaccagaaaatgctagttactgatttggaatatgcg
ttagacaagaaagtagaacaggatctctggaatcatgcctttaagaatcagatcacaaca
ctacaaggccaggcaaagaatcgagcaaacccgaatcggagtgaagttcaggcaaacctt
tctctgttcctagaggcagctagtggcttctatactcagttattacaagaactatgtaca
gtgtttaatgtagatttaccatgccgtgtgaagtcttcccaattgggaattatcagcaat
aaacagacgcataccagcgccatagtgaagccacagtctagctcctgttcctacatctgc
cagcactgcctcgtccaccttggagacattgctcgatacagaaaccagaccagccaggca
gagtcctactacaggcatgcagctcagcttgtcccctctaatggtcagccttataatcag
ttggctatcttagcttcttccaaaggagaccatctgaccacaattttctactactgcaga
agcatcgctgtgaagttccctttcccagctgcctccactaatctacaaaaagcactttct
aaagcactggaaagccgggatgaggtgaaaaccaaatggggtgtttctgacttcatcaag
gcctttattaaattccacggtcatgtgtacctgagtaagagcttggaaaagttgagccct
cttcgagagaaattggaagaacagtttaagaggctgctattccagaaagctttcaactct
cagcagttagttcacgtcactgtcattaacctgtttcaacttcatcaccttcgtgacttt
agcaatgaaacggagcagcatagttatagccaagatgagcagctgtgttggacacagttg
ctggccctctttatgtcttttcttggcatcctgtgcaagtgtcctctccagaacaagtct
caggaggaatcctacaatgcctatccccttcctgcagtcaaggtctccatggactggctg
agactcagacccagggtctttcaggaagcagtggtggatgaaagacagtacatttggccc
tggctaatttctctcctaaatagtttccatccccatgaagaggatctttcaagtactaat
gctacaccacttccagaggagtttgagttacaaggattcttggctttgagaccttctttc
aggaacttggatttttctaaaggccaccagggtatcacaggagacaaggaaggtcagcaa
cgacaaatacggcagcagcgcttgatctctataggcaaatggattgccgataatcagcca
aggctgattcagtgtgaaaatgaggtagggaaattgttgtttatcacagaaatcccagag
ttaatactggaagaccccagtgaagccaaagagaacctcattctgcaagaaccatccatg
gtagagtccctggctgcggacgggaacccaggactgaaatcagtgctgtccatgggccgt
aatctaagcaacaactgtgacccaggagagaagccaatggtcaccttcaaagagaacatt
aagccgcgagaagtgaacagagaccaaggaagaagttttcctcccaaagaggtgagaagg
gactatagcaaaggaattactgtaactaagaatgatggaaagaaggacaacagcaagagg
aaaacagaaaccaagaaatgcaccttagaaaagttacaggaaacaggaaagcagagtgtg
gcagtgcaggtaaaatcccagacagaactaagaaagactccagtgtctgaagccaggaaa
acacctgtaactcaaaccccaagtcaagcaagtaactcccagttcatccccattcatcac
cctggagccttccctcctcttcccagccggccagggttcccgccccccacatatgttatt
ccccctcctgtggcattttctatgggctcaggttacaccttcccagctggtgtttctgtc
ccaggaacctttcttcagcctacagctcactctccagcaggaaaccaggtgcaagctggg
aaacagtcccacattccttacagccagcaacggccctctggaccagggccaatgaaccag
ggacctcaacaaccacagccaccttcccagcaaccccttacatctctaccagctcagcca
acagcacagtctacaaaccagttgcaggttcaagctctagctcagcaacaatcccccaca
aaagctgtgccggctttggggaaaagccctcctcaccactctggattccagcagtatcaa
caggcagatgcctccaaacagctgtggaatccccctcaggttcaaggcccattagggaaa
atcatgcctgtgaaacagtcctactaccttcagtcccaagaccccataaaactgtttgag
ccgtcattgcaacctcctgtaatgcagcagcagcctctagagaaaaaaatgaagcctttt
cccatggagccatataaccataatccctcagaagtcaaggtcccagaattctactgggat
tcttcttacagcatggctgataacagagcagtaatggcccagcaagcaaatatggaccgc
aggggcaaacggtcaccaggagtcttccgtcccgagcaggatcctgtgcccaggatgccg
tttgaggaccccaagggctcccctctgcttcctccggacctgttaaagagtctggctgcc
ttggaggaagaggaagagctgattttttctaaccctcctgatctttacccagctttgctg
gggcctctcgcctctcttcctggacggagcctctttaaatccttgttggagaagccctcg
gagctcatgtcccattcctcttctttcttgtccctcaccggattttctctcaatcaggaa
agatacccaaataacagcgtgttcaatgaggtatatgggaaaaacctgacaaccagctcc
aaaacagaacttaatccttcgctggccccccaggagacatcactgtactccctcttcgaa
gggaccccctggtctccatcacttcctgccagttcagatcattcaacaccagccagccaa
tctcctcattcctctaacccaagcagcctgccaagctcccctccaacacacaaccataat
tctgttccattctccaactttggacccattggaactccagataacagggatagaagaact
gcagatcggtggaaaactgataagccagccatgggtgggtttggcattgactatctctca
gcgacatcatcctctgagagcagttggcatcaggccagcactccaagtggcacctgggca
ggccatggcccctccatggaggattcctctgctgtcctcatggaaagcctaaagtctatc
tggtccagttccatgatgcatcctggaccttccgctctggagcagctgttaatgcagcag
aagcagaaacagcagcggggacaaggcaccatgaaccctccacactga
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integrated database retrieval system
