Mustela nigripes (black-footed ferret): 132026828
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Entry
132026828 CDS
T09425
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03440
Homologous recombination
mnp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132026828 (PALB2)
03460 Fanconi anemia pathway
132026828 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132026828 (PALB2)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
132026828 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
132026828 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
132026828
NCBI-ProteinID:
XP_059271115
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Position
11:complement(21297206..21323826)
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AA seq
1181 aa
AA seq
DB search
MEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQKAEKVKNSVKKTVEEHDCLLQ
QEISPQPNHSEHKNKISPYDTLQINTHLDEETGEKTPITLDVEPESFNPGHGPVEELHIQ
RTGDIQEHFPYQVSGSGAEKRQSKLPGRRKKQQKRTYTAQARESFFDADSFLLSEKRLKK
QEEINRENPRTPVNERTCPLGSTSDIPSSREPMTETNIRGILSPPTAKPQRGVSALIGGN
NFSRVPTVASFTLSNSSSGQHLEHKPPKGDCELTTHNIKNINPASPVKVEAQGRSMTVST
DNSEVNKAVSGSGQLPRSPELEANNSYSVKELTYDNLPANENQNLKGQNHTEESLPSPHN
TLEGRNESLQEKEVLSQSTSLSPEVISPASAEGQTHSCTMVEGLLFPAEYYVRTTRRMSN
CQRKVALQAVIQSHLGVRKKGFKNKSTEETKNLNLCSEETDQSELRTSGIRTRQLSSRRP
EKCLLLTEVNSPTGPTEANLPRKAVTQPSGRRHGGKRKTVSPPVLDHHQRLLPTPGTAGV
HRSKEEVTLHEDPDEKAIHHGKKKIKGKDNRCPKEDSLSSRNNAYLALDSAAFTVSFQEN
ELLSLKELSSFLKTTDFQLPDEVFGPLKLEKLKSCSEKPEKVEPFVSNMYGQKHLKEGNC
SVLEELSPKQINIEMEDLEEEIIVLPGKAQAKTSDLTSRSQKKGLSSSVLLFTPLNTGAP
EDNNRPTAEMCSPTFPILGTTPAFGSQAHCEKVCSEVGPTCSKPQLPHLKDSDWKQCDGW
ASPSKSDGSLVVSGRGQPSCDCDSGPRATPFPTGSVTLKDNQLCGNPHPESRKQTDVADL
PACNSLNPGHLQLVSKLKNPSGSCSVDVSATWWEIAGFKEPCIITACEYVVSLWKPLDTW
QWEKLYSWQFTEVPVLQIVPVPDVCNLVCVALGNLEIREIRALLCSSDGKREKQVLLSSG
NIKAVLGLTERRLVSSSGTLCDQQVEIMTFAEDGGSKEKRFLMSPEETVLTFAEVHGMQE
ALLGTTIMNNIVIWNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLFLVLSHPCAKESEP
LGSPVFQLIVINPKTSLSVGVMLYCLPQGHAGRFLEGDVKDHFAAAVLTSGTIAIWDLLL
GHCTAVLPPVSDQHWSFVKWSATDSHLLAGQKDGNIFVYRY
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagccactcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgcccaaaaa
gctgagaaggttaagaattctgtaaagaaaacagtggaagaacatgattgcttgctccag
caggaaatttcaccacagccgaaccactcagaacataaaaataaaatatctccttatgac
acgttacaaatcaacacccatctggatgaagaaactggagaaaagacacctatcacactt
gacgttgaacctgagtccttcaaccctggacatggccctgtggaggaactacatatacaa
agaacaggtgatatccaggaacattttccctaccaggtcagtggctctggtgctgagaaa
aggcagagtaagctgccagggagaagaaaaaagcagcagaagagaacatatactgcacag
gcaagagaatctttctttgacgcggattcattcctactctctgagaaaagactaaagaaa
caggaggaaatcaatagagaaaatcctaggacacctgtaaatgaaagaacttgtccttta
ggttctacgtctgacattcctagttctcgagaaccaatgacagagactaacattaggggt
atattaagtccaccaactgccaaaccacaaagaggtgtcagtgctctaataggaggaaat
aatttctccagggttcctacggttgcttcatttactctgtcaaatagcagtagtggtcag
caccttgaacataagcctcctaaaggtgactgtgaactcactactcacaatataaaaaac
attaaccctgcttcacctgtaaaggtagaggcacaaggcagaagcatgacggtctctaca
gataactcagaggtaaacaaagctgtaagtggaagtggccagctgcccagaagtcctgag
ttagaggcaaataattcatactctgtaaaagaactcacttatgataacttaccagcaaat
gaaaaccaaaatttaaaaggacagaatcacacagaggagtctttaccatctccccataac
actcttgaaggtagaaatgaaagtcttcaggaaaaggaggttttaagtcaatctacgagt
cttagcccagaagtaatctcccctgcttctgcagaaggtcaaacacattcttgtacaatg
gttgaaggccttctgtttcccgcagagtattatgttagaacgacacgacgcatgtcaaac
tgccagaggaaagtagcgctgcaggctgtcattcagagtcatttgggtgtcagaaagaaa
ggttttaaaaataaaagtacggaggaaacaaaaaatttaaacctttgcagtgaagaaact
gaccagagtgaacttaggacatctggcatacgtacaagacaactaagttcaagaagacct
gagaagtgtctcttgttaacggaggtcaactctcccactgggcctactgaagctaacctt
cccaggaaggcagttacccagccatctggtagaagacacggaggaaaaagaaagacagtc
tccccacctgtattagatcatcatcaacgacttttgccaactcctggcacagcaggtgtt
catagatccaaggaagaagtcaccttacatgaagatccggatgaaaaagcaattcatcat
ggtaagaagaaaattaaagggaaggacaatcgttgtccaaaagaggactccctttcttcc
agaaataatgcttatctagctttggattctgctgcgttcacggtttcatttcaggagaat
gaactgctaagtttaaaggaactgtcatcttttctcaaaaccacagattttcagttaccc
gatgaagtctttggacctcttaaacttgaaaaactgaagtcctgttcagaaaaaccagaa
aaagttgagccttttgtatcaaacatgtatggacagaaacaccttaaggagggaaactgt
agtgttttagaagaactgagtcctaaacaaatcaatattgaaatggaggacttggaagag
gaaattattgttctcccgggaaaagcacaagctaaaacgtcagacctaacaagccggtct
cagaagaagggcctttcttcatctgtattactttttacacctttaaatactggtgccccc
gaggataataacaggcccacagcagagatgtgctcacccactttccccatcttaggcact
actccagcttttggctcccaagcacactgtgaaaaagtgtgttcagaggttgggccaact
tgctctaaaccccaacttcctcacttaaaagacagtgattggaaacaatgcgacggttgg
gctagcccatcaaaatcagatggcagcctggttgtgtcaggtagaggacagccttcctgt
gactgtgattctggtccccgggcaaccccttttcccaccgggtcagtcactctcaaagac
aatcaactgtgtggaaatccacacccagagtcaaggaaacagactgatgtagcagacctt
cctgcttgtaatagcttaaacccaggccaccttcagttggtttcaaagttaaagaatcct
tccggttcctgctcggtagatgtgagtgccacatggtgggaaatagcaggtttcaaggag
ccgtgtatcataactgcctgtgaatacgtggtttctctttggaaaccacttgatacttgg
cagtgggaaaaactttattcctggcaattcacagaggttccagtattacagatagttcca
gtgcctgatgtttgtaatctcgtgtgtgtggctttgggaaatttggaaatcagagaaatc
agggcattactttgttcctctgatggtaaacgtgaaaagcaagtattactgagttctgga
aatataaaagctgtgcttggcctgacagagaggaggctagtcagtagcagtgggaccctt
tgtgaccagcaagtagaaatcatgacatttgcagaagatggaggaagcaaagaaaaaaga
tttttgatgtcccctgaagagactgtactaacttttgctgaggtccacgggatgcaggaa
gctctgcttggtaccacaataatgaacaacattgttatttggaatttaaaaactggtcag
cttctgaaaaagatgcacattggtgattcctaccaagcttcagtctgtcacaaagcctat
tctgaaatggggctcctgttccttgttctgagccacccttgtgccaaggagagtgagccg
ctgggaagccccgtgtttcagctgatcgtgattaaccctaagacaagcctgagtgtgggt
gtgatgctctactgtcttcctcaagggcatgctggaaggttcctggagggagatgtgaaa
gatcattttgcagccgcagtattgacttctggaacaattgccatttgggacttacttctg
ggtcactgcactgctgtcctcccacctgtctctgatcagcattggtcttttgtgaaatgg
tcagctacagattcccatttgctggctggacaaaaagatggaaatatatttgtgtaccgc
tactaa
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