Mustela nigripes (black-footed ferret): 132026888
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Entry
132026888 CDS
T09425
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132026888 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132026888 (PARN)
Enzymes [BR:
mnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132026888 (PARN)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132026888 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
T6PP_C
Motif
Other DBs
NCBI-GeneID:
132026888
NCBI-ProteinID:
XP_059271266
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All DBs
Position
11:27521318..27678258
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGTGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHEEKQIKRKWTEDTWQEVERKRLK
TQSMSYALQNHYYHTNSLTATGTVEKRSLSPSPAEADLEARVSGEISDAELEPTESCAEP
VSEGRKKAKKLKRMKKDLSPAGGIPDSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcagggatcagtgatggaccttcagta
actgcattgacaaatggttttgacactccggaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacgtttaagtatgaccacacagat
tcaaagtatataacaaagtcattcaacttctacgtgttcccaaaacccttcaatagatcc
tcgccagatgtcaagtttgtttgtcagagttcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaattccgtatttaaatcaggaagaagaaagg
cagttaagagagcagtatgatgaaaaacgtctgcagtccaatggcacaggagcgctgtct
tacgtatctccaaacacttccaaatgtcctgtgacaattcctgaggaccagaagaagttc
atcgaccaagtggtagagaaaatagaagatttactacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaaggaaactgatttatcagactttgagctggaag
tatcccaaaggcatccacgttgacactttagaaactgaaaagaaagagcgctacatcgtc
atcagcaaagtagatgaagaggagcgtaagaggagggagcagcagaaactcgctaaggaa
caggaagaactgaatgatgctgtggggttttctagagtcatccacgccattgccaattcg
ggaaagctcgttattggacacaacatgctcttggatgtcatgcacacagttcatcagttc
tactgccctctgcctgcggacctaaatgaatttaaggagatgacaacgtgtgttttccct
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatctctcgcagaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcggaaggttttccaagttacgacacagctacggagcagctccacgaggccggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttt
cttagccctccaaaaattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggcccagacttg
caaccgaaacgggatcatgttctccatgtgaccttccccaaagagtggaaaaccagcgac
ctttaccaacttttcagtgcctttggtaacattcagatatcctggatcgatgacacatca
gcctttgtttctctcagccagcccgaacaagtacagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgccgaatatgtagggaaaaaacacgaggagaag
cagatcaagaggaagtggacagaagatacctggcaggaggttgagagaaaacgattaaag
actcagtccatgtcctacgctctgcagaatcactactaccacaccaacagtcttacagcc
actggcacggtagaaaagagaagcctgagtcccagcccagcagaagctgacttggaggcc
agagtatcgggggagatttctgacgccgagctcgagcccacagagtcctgtgcagaaccc
gtctccgagggaaggaaaaaggccaagaagttaaaaagaatgaagaaggacctttcacca
gcaggaggcatccccgacagcccggccaagctcttcgaagtccccgacacgtggtaa
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