Mustela nigripes (black-footed ferret): 132027114
Help
Entry
132027114 CDS
T09425
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
132027114 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mnp04121
]
132027114 (SLX4)
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132027114 (SLX4)
Ubiquitin system [BR:
mnp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
132027114 (SLX4)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
132027114 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
FokI_D3
zf-C2H2_4
YlbE
Motif
Other DBs
NCBI-GeneID:
132027114
NCBI-ProteinID:
XP_059271873
LinkDB
All DBs
Position
11:36394416..36412769
Genome browser
AA seq
1775 aa
AA seq
DB search
RPPAGLQAGQMMDESDDDFKELCASFLQRVKKNVTKEVSGERKTQKTSSSTQISKPKRTK
PTATKDKALQGPREKKTRSGSQAPRTKKQGAPEWQRSEPAPPENGGGSVLASAALQEGVQ
STQTEASPDSSSQPAPSCLTVMAPSPSKPRTAELVLQRMQQFKRPDPERLLRASEGCCLQ
AALAENAPVGPPEEMTAGNGPGPRLPATESDAAVALALQQEFGEQRASAQEADLEETGLF
FCQICQKNLSAMNLTRREQHVNRCLDEAEKALTPSTPQIPECPICGKPFLSPKSRMSHLK
QCAVKMDIGPQLLLQAVRLQTAEPDEASGTPASSFSNHIGGLKRKGAPKRKEPQKKWKVN
EPEVPSEDLLVAMALSRSEMERNAVPSVLRLESAFSERIRLGAEKKSRKRKALVCPPPLL
VQDLETRGRQTEDRVAQLFAEEMELSSTPPLPASRILKEEREKAGRHLQSPGGKQNFLWE
GSALTGAWVLEDFYTASLVPPMVPQQPAKGCSQEPTLPPDQPELGMQTPPALPSAPPVDH
GPRNLSPSASQREHQALQDLVDLAREGLSATPWPCSGGPARSGGATGMDMSPTGLPPTGF
VLPPEEKPLDRGSHASLTLGLLLADLRAMVDNPQLSDVQLQTDRGDVLYAHKFVLYARCP
LLMQYVNSEGFFVVEDGDPRSQRVLLSDVSTEAIRALLHYLYTADPGLPPQLAPDLRALA
HRFGVSELVLLCEQVPDVSDSEDGPWKQKEDKDCESRAENFQELLRSVWVDEEEEAEALL
KSESLEEDREKVNEAEMEEIYEFAATQRKLHQGEGAPEIKEEADQTGDNGPVSAQILASD
QISEQSENAEQMESSGQERGDAPATQRSMRQSTPPPLQGQCVDEEKAGAPEEALGRSGSP
PPSGGCREGRKEGRFWCSADAPEARPCSSTPRRCRGLSQIVSHLQEANGMVLGPRTGSPC
APAPRQTPPWSPCLSQPPGGQSPGPSHPRPCLRGESPSPGPQPQGRASWVTSQDSPAKRR
RSRSLLTILQDPGLQKGEDRGSLLECRNKELLTSPEKSPSIDLTQSKPACLSSRSQNAPS
SKNGEDEIILLLDSDEELELEQSKIKSGFNGPLEGRNVLEVSPKSSELFSVIDVDADQEI
LQSPVRREASLQGGEERPAGNRGSVGGRGTPRLSCDPKSSPEEDSTTDTSWLVPATPLAS
RSRDSSSQTQVTGLRSRASVDHMAQVKPWAPLENRGGPKAASKSSVITPQMSSSCLVPTY
AGSPDSQNPSRRPHPGRHQHGSPAPCPVSVGLANLTRQSQKHCPPGPGLLSQAIASEVVE
VEDSEDEQEAASQRANSSPLLDGDPPIPVDECHWHVEPLSPIPIDRLNLERTGPLSPGSP
GGKAREALEGSGCHSPALPATAPARGSCAGRRKSQEKSPRTSSPGSCRPSFLNSALWDDW
DGEDQKSPELLPPAQTPSADVAAQNSEALETPKGANRKNLPPKVPITPMPRYSIMETPVL
KKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLESDSENESQSSQEPPQALHSQTHASKTS
KAPRATGRARLEATSGPLPQRSKGSTKTKGPQHQKKQPGGSIPPMSSSPVREGPPDPDGD
AQLPASQESVASSMDGSDSSCSSLSSSSCEFGAAFESAEDDEGEEEGSASQAAVPAAATE
EAVRHYIRSRPALYRKVLLYQPFELAELQAELKQHGIRVATQKLLDFLDAHCITFTTAAA
RKERLHRKRRQPVGKKRGRAARPVHPSASQAVSGL
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
cgaccccctgcaggccttcaggctggtcagatgatggatgagtcagacgatgattttaag
gaactctgcgccagctttctccaaagggtgaaaaagaatgtcaccaaggaagtgtcaggg
gaaaggaagacacaaaagacctccagcagcactcagataagcaaaccgaaaaggaccaaa
ccaactgccaccaaggacaaagcccttcaaggccccagggagaagaagactcgttctggc
agccaggccccaaggactaaaaagcaaggggcacccgagtggcagaggagtgaacccgct
ccccctgagaatggagggggaagtgtgcttgcctctgctgcgctccaggagggtgtgcag
agcacccagacagaggcttctccggacagcagctcccagccggctccttcctgtctgaca
gtgatggctccgagtccctccaaaccccggacagcagagctggtcctccagcgaatgcag
cagttcaagagaccagaccccgagcgtttgctgcgcgcttcggaagggtgctgtctgcag
gctgcactggcagaaaatgccccagtgggccctccggaggagatgacggcggggaatggg
cctgggcccaggcttcccgccaccgagagcgatgctgcagtggccttggccctgcagcag
gagtttggggagcagcgagcatcggctcaggaggctgacctggaggagacgggcttgttc
ttctgccagatctgtcaaaagaacctctcagccatgaatttgacacgaagggaacagcac
gtgaaccggtgcttggatgaagctgaaaaggcactgacaccctccacacctcagatcccc
gaatgcccaatttgtggcaagccctttctcagcccgaagagcagaatgagccacttgaag
cagtgcgcggtgaagatggacatcggcccccagctcctgctccaggccgtgcggctgcag
acagctgagcctgacgaggccagtggcacaccggcgtcgagcttcagcaatcacattgga
ggtctgaagcggaagggagcccccaagaggaaggagccacagaagaaatggaaggtcaac
gagcccgaggtgccgtccgaggacctgctggtggccatggctctgtcccggtctgagatg
gagcggaatgctgtgccctcggtgctcagactggaaagcgctttctccgagaggataaga
ctgggggcagaaaagaagagtcgtaagaggaaagcacttgtatgccctcccccattgtta
gtccaggacctggagaccagagggaggcagacagaggaccgagtggcccagctcttcgca
gaggagatggagctgtccagcacgccgccactgcccgcgagcaggatcctgaaggaagag
cgggagaaggccggacggcatctgcagtcacctgggggaaagcagaactttttgtgggag
ggcagcgccctgactggggcctgggttctggaagacttctacaccgcaagcctggtccct
cccatggtgccccagcagcctgcgaagggttgtagccaggagcccacgctgccgcctgat
cagccagagctggggatgcaaacgccacccgctctccccagcgctccgcctgtggaccat
ggccccaggaacctatcaccctctgccagccagagagagcaccaggccttgcaggatctt
gtggacctggcgagagaggggctgagtgccaccccgtggccctgcagtgggggcccggca
cgctcaggaggggccacagggatggatatgtcgcctaccggccttccaccgactgggttt
gtcctgccacctgaggagaagcccctggacaggggcagccacgcttcgctcaccctcggt
ttgctgctggccgacctcagagccatggtcgataacccacagctgagtgacgtccagctt
cagacggaccgcggggacgtgctttacgcccacaagttcgtgctgtatgcccgatgcccc
cttctcatgcagtatgtgaacagcgaaggcttcttcgttgtggaggacggtgacccgcgg
agccagcgtgtgctgctgagtgacgtgagcaccgaggccatccgcgcgctcctgcactac
ctctacaccgcggaccccggcttgcctccccagctggctcctgacctccgcgctctggcc
cacaggtttggggttagcgagcttgttcttctgtgcgaacaagtgcctgacgtgagtgat
tcggaggacggaccgtggaagcagaaggaagacaaggattgtgaaagccgcgcggagaac
ttccaagaactcttgaggtctgtgtgggtagatgaggaggaagaagcggaggctttgttg
aaatctgagagccttgaagaagacagagaaaaagtgaatgaagcagaaatggaagaaatt
tatgaatttgcagccactcaacgaaagctgcaccagggggaaggagctccagagattaag
gaagaagctgaccagactggggacaatggtccagtgtctgctcaaatcctagcaagtgac
cagatcagcgaacagtcagaaaatgcagaacaaatggaatcatctggtcaggaaagagga
gacgccccagccacacagagaagcatgagacagtccacgcccccgccactccagggccag
tgtgtggatgaggagaaagcaggggccccagaggaagcactgggtcgttctggctcccct
cccccttctgggggctgcagggaagggagaaaggaaggcaggttctggtgctcagctgat
gctcctgaggcccggccgtgctcatcaactcccagaagatgccgtgggctgtcccagatc
gtgagccatctccaggaagccaatggtatggtcttgggaccgaggacggggagcccctgt
gcccctgctccccggcagacacccccgtggagcccgtgcctgtcacagccccctggaggc
cagagtcccggcccgtcacaccctcgtccttgtctcaggggcgagtcaccctcgccaggg
ccccagccgcagggcagagcttcctgggtgacctcccaggactccccagcaaagcggagg
aggagcaggagcctcctcacgatacttcaagatccaggcctccagaagggtgaggaccgt
ggttccttgttggaatgcagaaataaagagttgctgacttccccagagaagtctccatcc
atcgacctaacgcagtcaaaacctgcctgtttgagctccagatctcagaacgctccatcc
agcaagaacggagaagatgagattattcttttattggattcagatgaagaactggagcta
gaacaaagcaaaataaagtcaggttttaatggtcccctggaaggaaggaatgttctagaa
gtaagccccaagtcttctgagctattttctgtcatcgatgtcgatgcagatcaggaaatt
ctccaaagcccagtgagaagagaggcttccctgcagggcggggaggagaggccagcaggg
aaccggggttctgtggggggcagagggacccctcggctgtcatgtgaccccaagagcagc
cccgaggaggacagcaccacggatacctcatggctcgtgcccgccacgccattggccagc
agaagccgggactcctcctcgcagacgcaggtaacaggcctcaggtccagggcttcggtg
gaccacatggctcaggtcaagccctgggccccattagaaaacaggggtgggcccaaagct
gcaagtaagtcttcggtcatcaccccccagatgtcatcatcatgcctggtccccacctat
gcaggcagccccgacagccagaacccttctaggaggccccaccccgggcgccaccagcac
ggctctccagctccctgtcccgtctccgtcggcctcgccaatctcaccaggcagtcccag
aagcactgccctccggggcccggcctgctgagtcaggccatcgccagcgaggtggtggag
gtggaggacagcgaggatgagcaggaggcagcctcgcagcgggcaaacagcagccccctg
ctggacggcgaccctcctataccggtggatgagtgccactggcacgtggagcccctctca
ccgattcccattgaccgcctgaacctcgagcggaccggccccctgagccctggcagtccg
ggcggtaaggcccgggaggccctagagggcagtggctgccactccccagccctcccggcc
accgcccctgcccgcggaagctgcgctggccggagaaagtctcaagagaagtcccctcgg
accagctcacctgggagctgcagaccgagctttctgaactccgctctgtgggacgactgg
gatggagaggaccagaagtctccagagctgcttcctccagcccagacaccgagcgctgat
gttgctgctcagaactcagaagcgctggagacaccaaaaggtgctaatcggaagaacttg
cccccgaaagtgcccataacacccatgccaaggtactccatcatggagactccggtactg
aagaaagaactggataggtttggggtccgccctctacccaaacgccagatggtcctaaag
ctgaaggagatattccagtacactcaccagactctggagtccgactcggagaacgagagc
cagtcctcccaggagcccccgcaggctctgcacagccagacccacgccagcaagacctcc
aaggctcccagggccactggccgtgcccgactggaggccacttcaggccctcttccccaa
aggtccaagggctccactaagaccaagggcccccaacatcagaagaaacagcctggtgga
agcatccctcccatgagctcctcaccggtcagggaggggcctccagaccctgatggggac
gcccagctccccgcctcccaggaatcagtggcctcctccatggacggcagtgacagctcc
tgtagctcactaagctcttcttcctgtgagtttggagcggcctttgagtctgcagaggac
gacgagggtgaggaggagggcagtgcgtcccaggcggccgtgcccgcagcagccacggag
gaggccgtgaggcactacatccgctccaggccggccctctaccgcaaggtcctgctgtac
cagcccttcgagctggccgagctgcaggccgagctgaagcagcacggcatccgtgtggcc
acccagaagctgctggacttcctggacgctcactgcatcaccttcaccaccgccgcggcc
cggaaggagaggctccacaggaagaggcggcagccggtgggcaagaagaggggccgagcc
gccaggccggtccatccctccgcatcacaagccgtcagcggcctgtga
DBGET
integrated database retrieval system
