Mustela nigripes (black-footed ferret): 132027393
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Entry
132027393 CDS
T09425
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnp03041
]
132027393 (YTHDC2)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132027393 (YTHDC2)
Spliceosome [BR:
mnp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132027393 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
Ank_4
ABC_tran
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
132027393
NCBI-ProteinID:
XP_059272099
LinkDB
All DBs
Position
12:complement(145788155..145863533)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCGPGGGGRARGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIHIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENT
FKPESQRQRTVPSVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANIHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFR
ADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKT
SADTEFSDESAAAERVLTKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSSSY
PSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWVRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGDKTAAD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgcccgctcctgggggcggcgggggcggc
ccagctccgtgcggccctgggggcgggggccgggccagggggctgaaggacattcgtata
gacgaggaggtgaagatcgcggtcaatatcgctctggagcgcttccgatacggggaccag
agagaaatggaatttccttcctctttgaccagcactgaaagagcctttattcatcgattg
agtcaatctcttggtttggtctctaaaagtaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgt
actgaacttctacctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgg
gaaatgagcaaaacaagtgggcgactcaacaatggcatacctcagattccagtgaaaaga
ggggaatcggaatttgattctttcaggcagtctctgcctgtgtttgagaaacaagaagaa
attgttaaaataattaaagaaaataaagtagttttgattgtaggagaaactggctctgga
aagactacgcagattcctcagttccttttagatgattgctttaaaaatggtattccctgc
cgtatattttgtacccagccaagacggttagccgcaattgctgtggccgaaagagttgct
gcagagagaagagaaaggattggtcaaacaattggatatcagatccgattagaaagcagg
gtttctccaaagacacttctgacattttgcactaatggtgtattgcttcgtacgttgatg
gcaggagatagtacattgtcaactgtgacacatgttatagtggatgaagtacatgaaaga
gatcgatttagtgattttttacttacaaagttaagagatctgttgcaaaagcacccaact
ttgaaacttattctttctagtgccgccttggatgtaaatctttttataagatattttgga
agttgtccagtgatacatatacagggaagaccatttgaagtgaaagaaatgtttctggaa
gacatcttaagaactactggatacacaaacaaagaaatgttaaagtacaaaaaggaaaaa
caacgagaagagaaacagcaaaccacccttacagaatggtattcagctcaagagaatact
ttcaagcctgagtctcagaggcagagaactgttcccagtgtgactgaagagtatgattta
ttggatgacggtggtgatgctgtcttcagccagttgacagaaaaagatgtgaattgcctt
gaaccatggttaataaaggaaatggatgcttgtctctctgacatatggctgcataaagat
gttgatgccttcgctcaggtctttcaccttattttaactgaaaatgttagtgttgattac
aggcatagcgaaaccagtgcaacagccctcatggttgctgcagggcgaggtttttcaagt
caagtagagcagttaattagcatgggagccaacattcacagtaaagcatcgaatggctgg
atggctttagattgggccaaacactttggacagactgaaatagtggatcttctagaatca
tacagtgcttcactggagtttggaaatctagatgaaagttctctggttcacacaaacgga
agtgacctcagtgcagaagacagagagctcctgaaagcttatcatcacagttttgatgat
gaaaaagtagacttggatttgatcatgcaccttctttacaatatctgtcatggttgtgat
gctggtgcaatattaattttcctacctggatatgatgaaattgttggactgagggatcgc
atcctgtttgatgacaagcggtttgctgacaacacacatagataccaagtctttatgctt
cattcaaatatgcaaacgtcagatcaaaagaaagtattaaaaaacccacctgccggtgtt
cgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaacgatgttgtc
tttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtgtggatttccaaagctagtgccatacaacgaaaaggcagggcaggg
agatgcagacctggaatttgtttccggctgttcagtagactccgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattacaggaactttgtttacatactaag
ctgttagctccagtaaactgtcctattgccgatttccttatgaaagctcctgaaccccca
ccagctttaattgtaagaaatgctgtacagatgcttaagacaatagatgcaatggatgcc
tgggaggatctcactgagctgggatatcatttggctgacttgccggtagagccacatctt
ggtaaaatggtcctgtgcgctgttgttttaaagtgtctggaccccatcctcacaattgct
tgcacactagcctatcgagacccttttgtcctgccaacccaggcttctcaaaaacgggca
gctatgctatgtaggaaacgcttcactgcagggactttcagtgaccacatggcccttctc
cgagcattccaggcatggcagaaagcacgaagcgatgggtgggagcgagccttttgtgaa
aagaattttctttcacaagctaccatggaaataatcattggcatgagaactcagttgctt
ggtcagcttagagcatcaggctttgttagggcacgaggtggcggtgacattcgagatgtt
aacacaaattccgagaactgggctgtcgttaaagctgccttggtagcaggcatgtatcct
aatttagtccacgtggacagagaaaatgtcgtattgacagggccgaaggagaagaaagtt
cggtttcatcccacttcagttctcagccagcctcaatataaaaagattcctccagccaat
ggtcaggctgcagcgattcaggcactgcctacagattggcttatttatgatgagatgacc
agagctcacagaatagctaacattagatgttgttcggcagtgacccctgtcactgtgttg
gtattctgtggaccagcgaggctggcaagtaatgctcttcaggaaccttcatcgtttcga
gcggatggtattcctaatgacagtagtgacagtgaaatggaagatagaactactgctaat
ttagcagctttgaaacttgatgagtggctcaatttcaaactagagcctgaggcagccagt
ttgctgctgcagctccggcagaagtggcacagcttgtttttacgccgaatgagagcgcca
tccaaaccctggtctcaggttgatgaggccaccataagagccatcatcgctgttctcagc
acggaagaacagtctgcaggcttacagcagccgtcaggaataggccagaggccaaggcct
atgtcttcagaagaacttcctctggcatcatcttggaggtcaaataacagcaggaaaact
tcggcagatactgaattttcagatgagtctgctgctgcagaaagagtattgacaaaatct
ccatctccagcactgcacccccctcagaagtacaaagatagagggattttacatcctaaa
cgaagcactgatgaccgatcggatcagtcttctgtgaaatctacggacagcagtagctac
ccaagtccttgtgccagcccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaacctt
gaaatttctcagcagaagggtatctggtctacaacccctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacat
ttccagggattttctaggatgtcttctgagataggaagggagaagagccaggactggggc
tcagctggactgggaggagtatttaaggtggagtgggtccggaaggaaagtcttcccttt
cagtttgctcaccacttactcaatccctggaacgacaacaagaaagtccagatcagcaga
gatgggcaggagctagagcctcaggttggcgaacagttgctgcagctatgggaacgcctt
cccctgggagacaaaaccgcagccgactga
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integrated database retrieval system
