Mustela nigripes (black-footed ferret): 132027550
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Entry
132027550 CDS
T09425
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin alpha-4-like
KO
K16493
protocadherin alpha
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
132027550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mnp03036
]
132027550
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mnp04515
]
132027550
Chromosome and associated proteins [BR:
mnp03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
132027550
Cell adhesion molecules [BR:
mnp04515
]
Cadherins
Protocadherins
132027550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
Ig_BT4661_3rd
Motif
Other DBs
NCBI-GeneID:
132027550
NCBI-ProteinID:
XP_059272335
LinkDB
All DBs
Position
12:<77634010..77657359
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AA seq
891 aa
AA seq
DB search
KQSTAGWRWSFPGEAARNPGVCCFLFCSSQPGKQGVARFTXSVLEEAKHGTFVGRIAQDL
GLELAELVPRLFRVASKGHGDLLEVNLQNGILFVNSRIDREELCGRSLECSIHLEVIVDR
PLQVFHVEVEVKDINDNPPVFPGTQKNLFMAESRPVDSRVPLEGASDADIRANAMLTYTL
SPNEYFSLEKPSDDERVKRLGLLLRKSLDREAAPEIFLVLIATDGGKPELTGSVQLLIKV
LDANDNAPAFDRTLYAVKLPENVPNGTSVMKLNASDLDEGSNADIIYSFSTDILPNVETK
FRIDPITGEIMVKGSIDFEESKSYEILVEGVDKGQPPLSGHCTVMVEVEDTNDNAPLMEF
KSLSLPIREDAPLGTVIALISLSDRDSGLNGQVTCTLSPHVPFKLVSTFKNYYSLTFENC
SVFAMVYSQRSPGSWRLLLSLLLLTIWKAGSGQVHYSVLEEVKHGTFVGRIAQDLGLELA
ELVPRLFRVASKGHRDLLEVNLQNGILFVNSRIDREELCGRSLECSIHLEVIVDKPLQVF
HVEVEVKDINDNPPRFFRKEQRLFILESRIVDSRFPLEGAFDMDVGANAELRYKLNTNEY
FDLDVKANEEETSILELVLKKAVDREEIQEHLLLLTATDGGKPELTGTVQVLINVLDAND
NAPKFDKSVYNIRLLENTPNGTLVIKLNASDADDGINKEIVYLFSDLVLDNVKSKFIIDS
NSGEIRVKGKLDYEDCNLYEINIDAVDRSPFPLTGHCKVIVKLLDENDNTPEMAITSISL
PVQENASVGTVIALISLSDRDSGLNGQVTCTLSLHVPFKLVSTFKNYYSLVLDSALDRES
VSNYELVVTARDGGSPPLSATASPHDVAVYHEVNLVITVCKIHSSYYGLVP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
aaacaaagcactgccggctggagatggagttttcctggggaagcagccaggaatcccggc
gtctgctgctttctcttctgttcctcgcagcctggaaagcagggagtggccaggttcact
nactcagtcctggaggaggccaaacacggcaccttcgtgggccgcatcgcccaggatttg
gggctggagctggcggagctggtgccacgcctgttccgggtggcgtccaaaggccacggg
gaccttctggaggtaaatctacagaatggcattttgtttgtgaattctcggatcgatcgg
gaggagctgtgcgggcggagtctggagtgtagcatccacctggaggtgatcgtggacagg
ccgctgcaggttttccatgtggaggtggaagtgaaggatattaatgacaacccgcctgtg
ttccctggaacgcaaaagaatctatttatggcagaatccaggcctgttgactctcgggtt
ccactagagggcgcatccgatgcagatatccgggctaacgctatgctgacctacacactg
agccccaacgagtatttctcgttggaaaaaccgtcagatgacgagcgggtgaaacgtctc
gggctactgttaaggaaatctttagacagggaagcagctccggagatttttttagttctc
atagccactgacggcgggaaacctgagctgaccggctccgttcagttactcatcaaagtg
ctggacgcaaatgacaacgccccagctttcgacagaacactctatgcggtgaaattacca
gaaaatgttcccaatggaacgtcggtaatgaaacttaacgcctcagatttagatgaaggc
tcgaatgcggacattatttattcattctcaactgatattttaccaaatgtggaaaccaag
tttcgcatagatccaattactggagaaattatggtaaagggatctatcgattttgaagag
agcaaatcctatgaaattcttgtagagggtgttgataaaggacaacccccactctctggc
cattgtactgttatggtagaagttgaggacaccaatgacaatgccccactaatggaattc
aagtccctgtccctcccaatcagagaagacgctccattaggcaccgtcatcgccctgatc
agtctgtctgaccgcgactccggtctcaatgggcaggtgacctgcaccctgtcgccccac
gttcccttcaagctggtgtccaccttcaagaactactattcgctgacatttgaaaattgc
agcgtatttgcgatggtatattcccagagaagtccaggttcctggcgcctgctgctctct
cttctgctcctcacaatctggaaggccgggagcggccaggtccactactcagtcctggag
gaggtcaaacacggcaccttcgtgggccgcatcgcgcaagacctggggctggagcttgcg
gagctggtgccacgccttttccgagtggcatccaaaggtcatagagaccttctggaggta
aatctgcagaatggcattttgtttgtgaattctcggatcgaccgggaggagctgtgcggg
cggagtctggagtgcagcatccacctggaggtgatcgtggacaagccgctgcaggttttc
catgtggaggtggaggtgaaggacattaacgacaatccgccaaggttcttccgaaaggaa
caaagattatttattttagagtcaagaatagtggattcccggtttccgctagagggcgca
tttgatatggatgtcggagcaaacgcagaattgagatacaaactaaatactaatgaatat
tttgatttggatgttaaagcaaatgaagaagaaacaagcattttagagctagtcttaaag
aaagcagtagatcgggaagaaatccaggaacatcttttattactgacggcaactgatgga
ggaaaacctgaactaacaggtacagttcaagtattgatcaacgtattggatgcgaatgat
aatgcccccaaatttgataaatcagtttataatatcagattattagaaaatacaccaaat
gggacattagttattaaactgaacgcctcggatgcagatgacggcattaataaggaaata
gtatatctctttagtgatcttgttcttgacaatgtcaaatctaaatttataatcgattcg
aatagtggggaaattagagttaagggaaaactggattacgaagactgtaatttatatgaa
attaatattgatgctgtagatagaagtccattcccattaactggacactgcaaagtaata
gtaaaactcctggatgagaatgataataccccagagatggccataacctccatatctctg
ccggtacaagaaaacgcttcagtggggaccgtcatcgccctgatcagtctgtctgaccgc
gactccggtctcaatgggcaggtgacctgcaccctgtcgctccacgttcccttcaagctg
gtgtccaccttcaagaactactattcgctggtgctggacagtgccttggaccgcgagagc
gtgtccaactatgagctggtggtgacagcacgggacgggggatcgcctccgctctccgcc
accgccagcccgcatgatgtcgctgtctaccatgaagtcaacctagttattacagtatgc
aaaatccattcctcctattacggattagttccatga
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