Mustela nigripes (black-footed ferret): 132028643
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Entry
132028643 CDS
T09425
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132028643 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132028643 (MTREX)
03041 Spliceosome [BR:
mnp03041
]
132028643 (MTREX)
03009 Ribosome biogenesis [BR:
mnp03009
]
132028643 (MTREX)
03016 Transfer RNA biogenesis [BR:
mnp03016
]
132028643 (MTREX)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132028643 (MTREX)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132028643 (MTREX)
Spliceosome [BR:
mnp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132028643 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
132028643 (MTREX)
Ribosome biogenesis [BR:
mnp03009
]
Eukaryotic type
Pre-60S particles
Helicases
132028643 (MTREX)
Transfer RNA biogenesis [BR:
mnp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132028643 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
132028643
NCBI-ProteinID:
XP_059273856
LinkDB
All DBs
Position
12:84508574..84606643
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKGGKRFDGKLQSESTNTG
KTKRDADFEGTDEPIFGKKPRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVIYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggagatgaactgttcagcgtgttcgaggacgactcgaccacggcg
ccaggaactaaaaaagacaaggagaaagaaaaggggaaatggaaggggcctccggggtct
gcggaaaagggcgggaaacgttttgatggtaaattgcaatcagagtcaactaatactgga
aaaaccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagcct
agggtggaagaatctgtaaccgaagatttaagtttggcagacttgatgcccagagtcaag
gtgcaatctgtcgaaactgttgaagggtgtactcatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataaccagtctgttttagtatct
gcacatacatcagcaggaaagactgtatgcgctgaatacgccattgcattggccttaaga
gaaaaacaacgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaagatgttggattgatgactggagatgttactattaatcct
acagcgtcttgtcttgttatgactacagagattttgagaagcatgctctacagaggttca
gaagttatgcgagaagtagcatgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatctgccatttacat
aagcagccttgtcatgtaatttacacagactatcggcctactcctttgcaacactacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaagggacggaaaggaggaacaaaaggaccatccaatgtgttcaagatcgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagtttcagtaagaaagattgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccatagactgcttgtctgatgaggataaaaaactccctcag
gttgaacatgtacttcctctcttgaagcgaggaattggtattcatcatggcggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaactgttttatttacaaat
gcccggaaattcgatgggaaagatttccgatggatttcttctggtgaatacattcagatg
tctggtcgagctggaaggcggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacaattggaaaacagttacttaagggctcagctgatcctctaaat
agtgcttttcatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgag
gaaagtgttgtcatctattataagatcagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcataaaccaaaatattgcttaccgtttctacagccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaagaag
tcaaatgttaagcctaattccggtgaactggatcctttatatgtagttgaagtacttctc
cgctgtagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgttccagttttggtacaccttctgtctgccatcagc
agtgttaggctttacattcctaaagaccttcgaccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaggatcaagggctgaaaaaagttatccagaaagtggaggctttt
gagcatagaatgtattctcatccacttcacaatgacccaaatttggaaactgtgtatacg
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaaccgtcctacaaatggatgaactcaaatgtcgcaaacgtgttttaaggagg
ctgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctg
agtgccgaacaggcaacagcactacttagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacggaacagttagcaggaccacttcgtcagatgcaggaatgtgctaaa
aggattgcaaaagtttcagcagaagccaaactggaaattgatgaggaaacttacctaagc
tcattcaaacctcacttaatggatgtaatatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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