Massilia sp. NR 4-1: ACZ75_20555
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Entry
ACZ75_20555 CDS
T04026
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mnr
Massilia sp. NR 4-1
Brite
KEGG Orthology (KO) [BR:
mnr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mnr03016
]
ACZ75_20555
Enzymes [BR:
mnr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACZ75_20555
Transfer RNA biogenesis [BR:
mnr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACZ75_20555
Prokaryotic type
tRNA splicing ligases
ACZ75_20555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AKU23490
LinkDB
All DBs
Position
complement(4931355..4932590)
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AA seq
411 aa
AA seq
DB search
MKKDSFDVLNVEQGRPVKMWTRGVPVEDEAKKQLANTAKMPFIYKHIAAMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTANDLPDNLGPLRSAIERAVPHGMSPKTR
GFKGRDKGSWDTPPSAVDAAWLQLKDGFDRICDKTPKLKNTNNYKHLGTLGTGNHFIEIC
LDEEGAVWFMLHSGSRGVGNAIGTWFIELAKKDMRTHFINLPDQDLAYLSEGTQHYDDYV
EAVSWAQQFARMNREVMMQNLIAAVRRVITKPFQTHVEAVNCHHNYVQKEHHFGKDVLLT
RKGAVSARAGELGIIPGSMGAKSYIVRGKGNPDSFNSCSHGAGRTMSRTEAKRRFTVDDQ
VKATQGVECRKDADVIDEIPMAYKDIDAVMEAQRDLVEVVHTLKQIVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagatagttttgacgttctgaatgtagaacaaggccgcccagtgaagatgtgg
acgcgtggcgtgccggttgaggatgaggcgaagaagcagctggccaacacggccaagatg
cccttcatctacaagcatatcgccgccatgcccgacgtccatctgggtaaaggttcgacc
atcggtagcgtgatcccgaccctgggtgccgtcattcctgcggcggtgggcgtggatatc
ggttgcggcatgatggccgccaagaccacgctgaccgcaaacgatctgccggataatctc
ggcccgctgcgtagcgccatcgagcgcgccgtaccgcacggtatgtcgccgaagacgcgc
ggcttcaagggtcgcgataagggttcgtgggatacgccgccaagcgcggtcgatgcggcc
tggctgcagttgaaggatggtttcgaccgcatctgcgataagacgccgaagctgaagaac
accaacaactacaagcatctgggtacgctgggaacgggtaaccacttcatcgaaatctgc
ctggatgaagaaggcgccgtgtggttcatgctgcattccggttcgcgtggtgtaggtaat
gcaatcggcacctggttcatcgagctggcgaagaaggatatgcgcacccacttcatcaac
ctgccggaccaggatctggcctacctgtcggaaggaacgcagcattacgacgactacgtg
gaagcggtcagctgggcgcagcagttcgcccgcatgaaccgcgaggtcatgatgcagaac
ctgatcgcggcggtgcgcagggtcatcaccaagccgttccaaacccacgtggaggcggtg
aactgccaccacaactatgtgcagaaggagcaccacttcggtaaggatgtgctgctgacc
cgaaagggcgcggtatcggcgcgtgcaggtgagctgggcatcattccaggttcgatgggc
gccaagagctacatcgtgcgcggtaaaggaaatccggacagcttcaatagctgcagccac
ggcgccggacgtaccatgagccgtaccgaagccaaacgccgtttcaccgtggacgatcag
gtgaaggcgacgcaaggcgtggaatgccgtaaggacgccgatgtgatcgacgaaatccca
atggcttacaaggatatcgacgcggtgatggaagcccagcgcgacctggttgaagtggtg
cataccctgaaacagatcgtctgcgtcaaaggatag
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