Massilia sp. NR 4-1: ACZ75_23715
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Entry
ACZ75_23715 CDS
T04026
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mnr
Massilia sp. NR 4-1
Pathway
mnr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACZ75_23715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnr03019
]
ACZ75_23715
Enzymes [BR:
mnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACZ75_23715
Messenger RNA biogenesis [BR:
mnr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACZ75_23715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKU25114
LinkDB
All DBs
Position
5628385..5629863
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AA seq
492 aa
AA seq
DB search
MSDTEITLAPEGAAAAPAQVRFADFGLSPDIQRALTEQGYTHPTPIQAQAIPVVLQGRDV
MGAAQTGTGKTASFSLPIIQLLLAHANSSMSPARHPVRALVLTPTRELAVQVADNVKAYC
KHTPLRSTVVFGGMDMKPQTAALRSGIEIVIATPGRLLDHVEQKTVSLGQVQMLVMDEAD
RMLDMGFLPDLQRIINLLPKARQNLMFSATFSPEIKKLANSFLNNPVSIEVARSNATADK
VTQVVYKVAEEHKRDAVAHILRQRELKQVIVFSNTKIGASRLARGLEQEGMKATAIHGDK
SQQERMAALDAFKKGEIDVLVATDVAARGLDISDLPCVVNYDLPYNAEDYVHRIGRTGRA
GASGDAISIYSDKDERLLADIEKLIKQTIRRGELQGFAPGGHGGDERHGERRARRGSEAD
RSRGERGGAERAPGGERGRGAGGPGPRREKVDPWFLKPYEPSRSAAPAASAPLPAAKPKA
KLAALLGGLPKA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaccgagatcaccctggcgccggagggcgccgctgccgccccggcgcaagtc
cgctttgccgacttcggcctgtcgccggatatccagcgcgcgctgaccgagcagggctac
acccacccgacgccgatccaggcccaggccatcccggtcgtgctgcaagggcgcgacgtc
atgggcgcggcccagaccggcaccggcaagaccgccagcttctcgctgccgattatccag
ctgctgctggcccatgccaatagcagcatgtcgccggcgcgccacccggtgcgcgccctg
gtgctgaccccgacccgcgaactggcggtgcaggtggccgacaatgtcaaagcctattgc
aagcatacgccgctgcgctcgaccgtggtgttcggcggcatggacatgaagccgcagacg
gccgccctgcgcagcggcatcgaaatcgtcatcgccacgccgggccgcctgctcgaccac
gtcgagcagaagaccgtcagcctgggccaggtgcagatgctggtcatggacgaggccgac
cgcatgctcgacatgggcttcctgcccgacttgcagcgcatcatcaacctgctgcccaag
gcgcgccagaacctgatgttctcggccaccttctcgcccgagatcaagaagctggccaac
agcttcctcaacaacccggtctcgatcgaggtggcgcgcagcaatgccacggccgacaag
gtgacccaggtggtatacaaggtggccgaggagcacaagcgcgacgccgtcgcccacatc
ctgcgccagcgcgagctgaagcaggtgatcgtgttctcgaataccaagatcggcgcctcg
cgcctggcgcgcggcctggagcaggagggcatgaaagccaccgccatccacggcgacaag
agccagcaggaacgcatggccgcgctggatgccttcaagaagggcgagatcgacgtgctg
gtggccaccgacgtggcggcgcgcggcctcgacatctccgacctgccgtgcgtggtcaac
tacgacctgccgtacaacgccgaagactatgtgcaccgcatcggccgcaccggccgcgcc
ggcgcctcgggcgacgccatctcgatctattcggacaaggacgagcgcctgctggccgat
atcgaaaagctgatcaagcaaaccatccgccgcggcgagctgcagggcttcgcgcccggc
ggccacggcggcgacgagcggcatggcgagcgccgtgcgcggcgcggttcggaagccgac
cgcagccgcggcgaacgcggcggcgccgagcgcgcgccgggcggcgagcgcggccgtggc
gcgggcggcccgggtccgcgccgcgagaaggtcgacccgtggttcctgaaaccgtatgag
ccgagccgcagcgccgcgccggcggccagcgcgcccttgccggccgccaagcccaaggcc
aagctggccgcgctgctgggcggcctgcccaaggcttaa
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