Massilia sp. NR 4-1: ACZ75_25520
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Entry
ACZ75_25520 CDS
T04026
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mnr
Massilia sp. NR 4-1
Brite
KEGG Orthology (KO) [BR:
mnr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnr03019
]
ACZ75_25520
Enzymes [BR:
mnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACZ75_25520
Messenger RNA biogenesis [BR:
mnr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACZ75_25520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_30
AAA_16
TsaE
SRP54
SLFN-g3_helicase
ResIII
PhoH
ABC_tran
DUF5643
Motif
Other DBs
NCBI-ProteinID:
AKU25151
UniProt:
A0A0K1K7I0
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All DBs
Position
6048049..6052056
Genome browser
AA seq
1335 aa
AA seq
DB search
MQGQGRREERPRLTDEERAARQAARAAETAFRNPMPPITFPEELPVSGRREEIAQALRKH
QVVIVSGETGSGKTTQLPKICLELGRGQKGLIGHTQPRRIAASSTAKRIAQELGTPLGEN
VGYKVRFNDTLSKGAAVKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYL
KQLLPRRPDLKIIITSATIDAERFARHFGLEGKPPVPVIEVSGRLYAVEVRYRPVERDPV
ALPGADSGKPPSKAAAAREKRDLMDAVIDGVDEVCRIGSGDVLVFLPGEREIRDAAEALR
KHHPPHVEILPLFARLSVEEQDRVFRTTNARRIVLATNVAETSLTVPGIRYVVDAGLARV
KRYSYRNKVEQLQIEPVAQSAANQRAGRCGRVADGVCIRLYDEQDYLQRPKFTDPEILRS
SLASVILRMKSLHLTDVETFPFIEPPLARAIADGYQLLQELGAVDENNRLTPLGRKLAKL
PLDPRVGRMILAAQENACLTEVLIVAAALSVQDPRDRPIEHQQAADEAHKKFADEKSEFL
SYLKIWRWFEQAIEHKKTNRQLQDNCRSNFLSQLRLREWRDVHSQLLTIVKEQGWRMNEA
PATYEQLHLALLTGLLGNLGFKQDDEPGAGYLGARGIRFHVWPGSSLSKKPGKWIVAAEL
VETTRLYARCVAQIQPEWVEKIGGHLLKKSWGEPRWEKRPAQVTAAEKATLYGLTVYSQR
RINYGLRNPVEAREIFIRDALVGGDFDTRAPFFIHNHKLVKEIENLEHKSRRQDVLVDDQ
LIEAFYDKLIPADVVNGAGFEKWHKDATAGDPKLLFLNRDDLMRHEAAGVTTELFPKKMM
VTGLEMQLSYHFEPGSVRDGVTLTVPLYALNQLPRERCEWLVPGMLKEKVHLLLKSLPQK
QRRHMVPLPDYSAKFCERVQDANAFGRGDLVDAIIADIRAQITINVLTTDFKPEQLPAHH
FMNFKVVDEHGRQLDMGRNLATLQAEYGSQARQSFQKMAEATPAQLAQLTGGAVPASAAA
PAAGKAHGGIAAGQRDKAPPPGAPAAAPAAPSAHSNITGWSFGELPELLEITQGKLSLIG
FPALVDKGTHCDLEVFDDPNVAMRTHRVGLRRLFALQMKDQIKFVEKSIPNLQQMGMQFM
AMGTQEELRDQIIAKALDIACLQDPLPTDEASFLKRKDEGKSRLVLLVNEIARLVSQVLT
EFHGLPKRLQGLNPQAAQDMQGQLQGLVHKRFLQDSEFSQLAHFPRYLKAMNVRIEKLRA
DPARDAKAMSEWQQAAAPYLRLARDKSAGKNTDPKMAEYRWLLEELRVSLFAQELRTPMP
VSVKRLAKVWESMLR
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
ctgcagggacagggccggcgcgaagaacgtccgcgcttgacggatgaagagcgcgccgcg
cgccaggctgcgcgcgcggcggaaaccgctttccgcaacccgatgccgccgattactttc
cccgaagagctgccggtgtccggccgccgcgaggaaatcgcgcaggcgctgcgcaagcac
caggtggtgatcgtgtccggcgaaacaggttcgggcaagaccacccagctgccgaaaatc
tgcctggaactgggacgcggccagaaaggcctgatcggccacacccagccgcgccgtatc
gccgcctcgtccaccgccaagcgcatcgcccaggaactgggcacgccgctgggcgagaac
gtcggctacaaggtgcgcttcaacgacaccctgagcaagggcgccgccgtcaagctgatg
accgacggcatcctgctggccgaaacccagaccgatccgctgctcaaggcctacgacacc
atcatcatcgacgaggcgcacgaacgcagcctgaacatcgatttcctgctcggctacctg
aagcagctgctgccgcgccgtccggacctgaagatcatcatcacctcggccaccatcgat
gccgagcgtttcgcgcgccacttcggcctggaaggcaaaccgccggtgccggtgatcgaa
gtctcgggccgcctgtacgcggtggaagtgcgctaccgcccggtggagcgcgatccggtg
gccttgccgggcgccgacagcggcaagccgccgtcgaaagccgccgccgcgcgcgagaag
cgcgacctgatggatgccgtgatcgatggcgtggacgaggtgtgccgcatcggctcgggc
gacgtgctggtcttcctgcccggcgaacgcgaaatccgcgacgccgccgaagccctgcgc
aagcaccatccgccgcatgtggaaatcctgcccctgttcgcccgcctttcggtggaagaa
caggaccgcgtcttccgcaccaccaatgcgcgccgcatcgtgctggccaccaacgtggcc
gagacctcgctgaccgtgccgggcatccgctacgtggtcgatgccggcctggcgcgcgtc
aagcgctacagctaccgcaacaaggtggagcagttgcagatcgagccggtggcgcaatcg
gccgccaaccagcgcgccggccgttgcggccgggtcgccgacggcgtctgcatccgcctg
tacgacgagcaggactacctgcaacgccccaaattcaccgatccggaaatcctgcgttct
tcgctggcctccgtcatcctgcgcatgaagtccctgcatctgaccgatgtcgagaccttc
cccttcatcgagccgccgctggcgcgcgcgattgccgacggctaccagctgctgcaggag
ctgggcgcggtggacgagaacaaccgcctgacgccgctgggccgcaagctggccaagcta
ccgctcgatccgcgcgtgggccgcatgatcctggccgcgcaggaaaacgcctgcctgacc
gaggtgctgatcgtggccgccgcgctgtcggtgcaagacccgcgcgaccgcccgatcgag
caccagcaggcggccgacgaggcgcacaagaaattcgccgacgagaagtccgagttcctc
agctatctgaaaatctggcgctggttcgagcaagccatcgagcacaagaaaaccaaccgc
cagctgcaggacaattgccgcagcaatttcctgtcccagctgcgcctgcgcgaatggcgc
gacgtgcattcgcaactgctcaccatcgtcaaggagcagggttggcgcatgaatgaggcg
cccgcgacgtacgaacaattgcacctggccctgttgactggcctgctgggcaatctcggc
ttcaagcaggacgacgagccgggcgccggctacctgggcgcgcgcggcatccgtttccac
gtctggcccggttcctcgctgtcgaaaaagcccggcaagtggatcgtcgccgccgagctg
gtggaaaccacgcgcctgtacgcgcgctgcgtggcccagattcagcccgagtgggtggaa
aagatcggcggccacctgctgaaaaaatcctggggcgagccgcgctgggaaaaacgcccg
gcccaggtgacggcggccgaaaaggccacgctgtacggcttgaccgtgtacagccagcgc
cgcatcaactacggcttgcgcaatccagtggaagcgcgcgaaatcttcatccgcgacgcg
ctggtgggcggcgacttcgatacccgcgccccgttcttcatccacaaccacaagctggtg
aaggaaatcgagaacctcgaacacaagtcgcgccgccaggacgtgctggtggacgaccag
ttgatcgaagccttctacgacaagctgattccggccgatgtggtgaacggcgccggtttc
gagaaatggcataaggacgccacggccggcgatccgaaactgctgttcctgaaccgtgac
gatctgatgcgccatgaggcggcgggcgtgaccacggaactgttcccgaaaaagatgatg
gtgacgggcctggaaatgcagctcagctaccacttcgaaccgggcagcgtgcgcgatggc
gtgaccctgaccgtgccgctgtacgcgctgaaccagttgccgcgcgagcgctgcgaatgg
ctggtgccgggcatgctgaaggaaaaagtgcatctgctgctgaaatccctgccgcagaag
cagcgccgccacatggtgccgctgccggactactcggccaaattctgcgagcgcgtgcag
gacgccaacgccttcggccgcggcgacctggtcgatgccatcatcgccgacatccgcgcc
cagatcacgatcaatgtgctgaccaccgacttcaagccggaacagctgcccgcccaccac
ttcatgaacttcaaggtggtggacgagcatggccgccagctcgatatgggccgcaacctg
gccaccctgcaggccgaatacggcagccaggcgcgccagagcttccagaagatggcggaa
gccacgccggcgcaactggcgcagctgaccggcggtgcggtcccggcatcggccgccgcg
ccggcggccggcaaggcgcacggcggcatcgccgcgggacagcgcgacaaggcgccgccg
ccgggcgctcccgccgcggcgccggccgcgccatcggcccacagcaacatcaccggctgg
agcttcggcgaattgcccgagctgctggaaatcacccagggtaaactgagcctgatcggc
ttcccggccctggtggacaaaggcacgcactgcgacctggaggtgttcgacgatccgaac
gtggccatgcgcacccaccgcgtcggcctgcgccgcctgttcgccctgcagatgaaggac
cagatcaagttcgtggaaaagagcatccccaacctgcagcagatgggcatgcagttcatg
gccatgggcacgcaggaagagctgcgcgaccagatcattgccaaggcgctcgatatcgcc
tgcctgcaggatccgttgccgaccgacgaagcgagcttcctcaagcgcaaggacgaaggc
aagtcgcgcctggtgctgctggtgaacgagattgcgcgcctggtttcgcaagtgctgacc
gaattccacggtctgcccaagcgcctgcaaggcctgaacccgcaggccgcgcaggatatg
caaggccagctgcaaggcctggtgcacaagcgcttcctgcaagacagcgagttcagccag
ctggcccacttcccgcgctatctgaaggcgatgaacgtgcgcatcgaaaagctgcgcgcc
gatcccgcgcgcgacgccaaagccatgtcggaatggcagcaggccgccgccccgtatctg
cgcctggcgcgcgacaagtcggccggcaagaacaccgaccccaaaatggccgaataccgc
tggctgctggaagagctgcgcgtctccctgttcgcgcaggaactgcgcacgccgatgccg
gtgtcggtcaagcgtttggcgaaggtgtgggagtcgatgctgcgctga
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