Moraxella nasovis: LU293_06400
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Entry
LU293_06400 CDS
T08442
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mns
Moraxella nasovis
Pathway
mns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LU293_06400 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mns03021
]
LU293_06400 (rpoC)
03400 DNA repair and recombination proteins [BR:
mns03400
]
LU293_06400 (rpoC)
Enzymes [BR:
mns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LU293_06400 (rpoC)
Transcription machinery [BR:
mns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LU293_06400 (rpoC)
DNA repair and recombination proteins [BR:
mns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LU293_06400 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UNU72739
LinkDB
All DBs
Position
1297989..1302212
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLDITRGPAENGMKEFDSIQISLASPDTVRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGIICEKCGVEVTAAKVRRERMGHIELASPVAHIWFLK
SLPSRIGLLLDITLRDIERVLYFESYIVTDAGLTGLEKYQLLDDEEYFNALEQYGDEFTA
KMGAEAVQDLLKDIDVDNEIDMLREAIPQTGSETKLKKMAKRLQLLEAFRDSGNKPEWMV
MTVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRM
LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYAKLLQNNIASTIKAAKKMVEREEPAVWDMLASVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQL
EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRSHVGARGENMVFSTVNEALRAIG
SDDLSVNAKIKVRVTETILDEKTGEKTTHTEIKDTVAGRLLIWDIMPEGMAFSECNTEMT
KKNISKLLNSCYRKLGVKDSVMFADHLMYLGFAQATLSGISIGMEDMVIPPNKKQIVDAA
DAEVREIEQQFEQGFVTAGERYNKVVDIWSRTSDKIANAMMENLSTDDVINADGEKEIEK
SFNSIYMMADSGARGSATQIRQLAGMRGLMAKPDGSIIETPIKANFREGLSVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVAQDLVITIDDCGTESGQLITPVIDGGEIVERLGD
RVLGRVAAKDVINADGQIVVAKGDLIDERLVEALDKNAIDEVYVRSVITCEASHGVCAKC
YGRDLARGHLVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASATSVDNSVSVGNAGTV
RFHNMKTVEHVDGHLVIVSRSAEIGVADAQGRERERYKVPYGSNVLVRDGAEVNAGDVIA
KWDPHTHPIITEFAGTARFSDITDGMTATVKVDETTGMSSFEILASKDRPSLSKDLRPAI
ILDTEEGKEVVYFLPAETIIRVSEGEQVAAGSVLGRVPQATSGTKDITGGLPRVADLFEA
RKPKDHAILAEITGVVSFGKETKGKNRFIITDEDGNVHEELIPKWRQINVFEGETVERGE
IIADGPANPHDILRLKGETALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVEIVD
GGDSSYFTGDQAEYTKVRMLNEELTANDKFPVKYERQLLGITKASLATESFISAASFQET
TRVLTAAATMGKVDDLSGLKENVVVGRLIPAGTGLAYHKNRKRKAQQADEEVVALDEILN
LGDDNATQTVEDNFAAAFAEELNQDSK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttattagacatcacaagaggccctgccgaaaacggcatgaaggaatttgac
agcattcagatttcattagcgtcacctgatacggtacgttcgtggtcttatggtgaggtt
aaaaagcctgagacgattaattatcgcacattcaagcctgaacgtgatggcttattttgt
gccaaaatctttggccctgttaaagattttgagtgcttatgcggcaaatacaaacgccgt
aaatttcaaggtattatttgcgaaaaatgtggcgtggaagttaccgctgctaaagtgcgt
cgtgaacgcatggggcatattgagctggcaagtcctgtagctcatatttggttcttaaaa
tcactgccaagccgtatcggtcttttgcttgacatcacgctgcgtgatattgagcgcgtg
ctttattttgaaagctacatcgtaacagatgcaggcttaacaggtcttgaaaaatatcaa
ttactagatgatgaagaatattttaacgcattagaacagtatggtgatgaatttaccgcc
aaaatgggtgctgaagcggttcaagatttattaaaagacatcgatgttgataatgagatt
gatatgttgcgtgaagcaattccgcaaacgggctctgaaaccaagctcaagaaaatggca
aaacgcttgcaattattagaagcgttccgtgattctggtaacaagcctgaatggatggtg
atgacggttctgcctgtattgccacctgatttgcgtccgcttgtgccacttgaaggcggt
cgttttgccacgtctgatttgaacgatttatatcgccgtgtcatcaaccgtaacaaccgc
ctaaaacgtcttttggaattaaacgctcctgacatcattgtgcgtaacgaaaaacgtatg
ctccaagaagcggtggacgcattgcttgataacggtcgccgtggacgtgcgattactggc
tctaataaacgccccctaaaatccttggcagacatgattaagggtaaacagggtcgtttc
cgccaaaacctactgggtaagcgtgtggactactcgggtcgttcggtgattgttgtaggt
cctacactgcgtctacaccaatgcggtctgccaaagaaaatggcattagagttatttaag
ccatttacttacgctaaattgctacaaaacaacattgcaagcacgattaaagcggctaag
aagatggtagagcgtgaagagcctgcggtttgggatatgcttgctagcgtaattcgtgaa
cacccagtgctactaaaccgtgctccaacacttcaccgtctaggtctgcaagcttttgag
ccagtattgattgaaggtaaggcaattcagctacacccattggtgtgtgcggcgtttaac
gcagactttgatggcgaccaaatggcggtacacgtaccattgaccctagaggctcagctt
gaagctcgtgctttgatgatgtcaactaataacattctgtcgcctgcgaacggtgagccg
attatcgtaccatcacaagacgtggtattggggctgtactacatcagccgtagtcatgtc
ggagcccgtggcgaaaacatggtctttagtacggttaatgaagccttgcgtgcgattggc
tctgatgatttatctgtcaatgccaaaattaaagtgcgtgtgaccgagaccattttggac
gaaaaaacaggcgaaaaaaccacacatactgaaatcaaagacactgtcgcaggccgtctg
ctcatctgggacattatgccagagggtatggcgtttagtgagtgtaatactgagatgact
aagaaaaacatctcaaaactgctcaactcttgctatcgtaagcttggtgtgaaagattcg
gtgatgtttgctgaccatttgatgtatttaggtttcgcccaagcgaccctatctggcatc
tcaatcggtatggaagacatggtgattccaccaaataaaaagcaaatcgtggatgcagcc
gatgccgaagtgcgtgagattgaacagcaatttgaacaaggctttgttaccgcgggtgag
cgttataataaagtagttgatatttggtctcgtacgtctgataagattgccaatgcgatg
atggagaacctatcaactgatgacgtcattaacgctgatggcgaaaaagagattgaaaaa
tcgtttaattcaatctatatgatggcagactctggagctcgtggtagtgctactcagatt
cgtcagcttgctggtatgcgtggcttgatggcaaaaccagacggctctatcattgaaaca
ccgattaaggcaaatttccgtgaaggtctaagcgtactgcagtactttatctcaacgcac
ggtgcccgtaagggtcttgctgataccgccctaaaaacggcgaactcaggttacctaact
cgtcgccttgttgatgtcgcacaggacttggtaattaccattgatgactgtggcacagag
tcaggacagctgatcacacctgtgattgatggtggtgaaatcgtagagcgtttaggcgat
cgtgtacttggtcgtgtggcagctaaagacgtcattaatgctgatggtcagattgttgtt
gctaaaggcgatctgattgatgaacgcttggttgaagctttagataaaaatgccattgat
gaagtgtatgtgcgttctgtgatcacttgcgaagcatctcatggtgtgtgtgctaagtgc
tatggtcgtgatttggctcgtggtcatttggtgaatattggcgaatcagttggtgtcatg
gcagctcagtctatcggtgaaccgggtacacagctgaccatgcgtactttccacgttggt
ggtgcagcaagtgctacttcggtggataatagtgtttctgtgggtaatgccggtacagtt
cgtttccataacatgaagacagtagagcatgttgatgggcatcttgttatcgtttctcgc
tcagctgagattggggtggcagatgcccaaggccgtgagcgtgaacgctataaagtgcct
tatggttctaatgtattggtgcgcgatggggcagaggttaatgcaggcgatgtgattgct
aaatgggatccgcatacccacccaatcatcactgaatttgcaggtacagcacgttttagc
gacatcaccgatggcatgaccgccacagtgaaagtcgatgaaaccacaggtatgagttcg
tttgaaattttggcaagtaaagaccgcccaagcctatcaaaagacttacgtcctgctatt
atcttagataccgaagaaggtaaagaagtggtgtatttcctacctgctgagaccatcatt
cgtgtatcagaaggtgagcaggtagcagcaggttcggtattagggcgtgtgccgcaagcc
acatcaggtactaaagatattacaggtggtttgccacgagttgctgacttgtttgaagca
cgtaagccaaaagatcacgcaatcttggctgagataacgggcgttgtgtcatttggtaaa
gaaaccaagggcaaaaaccgctttatcatcaccgatgaagatggcaatgtgcatgaagag
ttgattccaaaatggcgtcaaatcaacgtctttgaaggcgagacggtagagcgtggcgag
attatcgctgacggtcctgctaacccgcatgacatcttacgtctaaaaggcgagacggca
ctggcaaactatatcgtgaacgaagttcaagaagtgtatcgcttgcaaggcgttaagatt
aacgataagcacattgaggttatcgttcgtcaaatgttgcgtaaagttgagattgtcgat
ggtggtgattcaagctactttacaggcgatcaagcagaatacaccaaagttcgtatgcta
aacgaagagctgaccgcaaatgataagttcccagtgaagtatgagcgtcaattgcttggt
attactaaggcgtctttggcaaccgaaagcttcatttcggcagcatcattccaagagacc
actcgtgttcttaccgctgctgctacgatgggcaaggtggacgatttgtctggtcttaaa
gaaaacgtggttgtgggtcgtctgattccagcaggcacaggtcttgcttaccacaaaaac
cgtaagcgtaaagctcagcaagccgacgaagaagtggtagcattagatgagattttaaac
ttaggtgatgacaatgccacccaaacagtagaggataactttgctgcagcgttcgctgaa
gagctaaaccaagactctaaataa
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