Morus notabilis: 21386936
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Entry
21386936 CDS
T07292
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mnt
Morus notabilis
Pathway
mnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
21386936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21386936
Enzymes [BR:
mnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
21386936
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
21386936
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
21386936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
C1_2
zf-MYND
Motif
Other DBs
NCBI-GeneID:
21386936
NCBI-ProteinID:
XP_010103937
UniProt:
W9RMH7
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MSGQESDSPKNKVLVGLPFDTPVVDIEINPYVNVAPKKSSISVPQHTFTYSWYRKQISFH
CSIHPDKLATLQCNVCVKLKLPVEESYYCSRCCFINAWKKHKVSHDQVNGTDRTANGQAG
GELRSSGPWHCKDWTKVEWVKVGSSKSYKPTSDDYGSILKLEVVAVDCSTSAQLSPIAVV
LENPVINAPTREPRRIIKCSLSGGNFDTKCHSKKDATFSVLSYNVLAAVFASRERYSYCP
TWALVWEYRRQKLLNEIIEYDADIICLQEVQSDHFESFFEPELTKRGYSVMYKKKTQLLY
TANKYVSDGCATFYRSKLFKVIMKHEVEFEKLAENLVNALPPHLREKYSVRLAKGNVAHI
AVLETLDNERFRGVLQSRICVANTHIHANTDSPDVKLFQVVGLVNVLEEIVQSHIPLLIC
TDLNSPPLSDPHRFIVSGRCNLVDNEIKEHLELLHYLKIHHSLPLASAYASFPVLAGDEK
RLQFMDTKAKEPLFTNFTKNFAGTLDYIFYTENSLRVEGLLELLDCERLGPGLPSSVWPS
DHIALMARFGLKPPPARVGQRSPRSPLNSWVKTGARQ
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtcaagaatctgatagccccaagaacaaagtgttagtggggctgcctttcgat
actccagttgttgatattgaaatcaatccatatgttaatgtcgccccaaagaaatcttcc
attagcgtccctcaacatactttcacttattcctggtatcgaaagcagatcagctttcat
tgttccatacaccctgataagttggccacacttcaatgtaacgtttgtgtgaagttgaaa
ctaccagttgaggagagttactattgctctaggtgctgcttcattaacgcgtggaaaaag
cacaaggtctctcatgatcaagtcaatggaactgacagaaccgcaaatggacaagcagga
ggagaactcagaagtagtggcccatggcattgtaaagattggactaaggttgaatgggtc
aaggttggttcttcaaaatcttataaacccacatcggatgattatggttccattctaaag
ctggaagtcgtagcagtagattgctcaacaagtgctcaattgtctcccatagcggtcgta
ttggagaatcctgtgattaatgctcctactcgtgagcctcgtcgcataatcaaatgttcg
ctgagtggtgggaactttgacaccaaatgtcattctaaaaaggatgcgacattcagtgtg
ctatcctataatgtccttgctgctgtgtttgctagccgggaaaggtacagctactgtccc
acatgggctcttgtatgggaatatcggaggcaaaaattactcaacgaaatcatcgagtat
gatgcagatataatttgtcttcaggaggtgcaaagtgatcattttgaaagtttctttgag
ccagagctgacaaaacgtggttactccgttatgtacaagaagaaaacccaattgctctat
acagctaacaagtacgtaagtgatgggtgcgccacattctaccggagtaagctattcaaa
gtcataatgaaacatgaggtcgagtttgagaaattagcagagaatttggtcaacgcattg
ccccctcatctaagagaaaaatatagcgtccgcctggcgaagggcaatgttgcgcatatt
gctgtattagaaactctagacaatgagagatttcgaggtgttctccagtctagaatttgt
gtggcaaacactcacatccacgcaaatacagacagtccagatgtaaagttatttcaggtt
gtggggcttgtcaatgtacttgaggaaattgtccagtctcatattcctctattgatctgt
acagatctcaactctcctccgttaagtgatcctcatagatttatagttagcggcaggtgc
aatcttgttgataatgagataaaggagcatttggagttacttcattatctcaagattcac
cattcgttgcctctggcaagtgcatatgcttcgtttcctgttttggctggtgatgagaaa
cgactgcagtttatggacacgaaagctaaggagcctctgttcaccaactttacaaaaaac
ttcgcaggaactttggattacattttctatacagagaacagtttgagggttgaaggccta
ttggagcttcttgattgcgaacgccttggtcctggtcttccatcttctgtttggccatca
gatcacatcgccctcatggcaaggtttggcctcaagccaccacctgctagggtgggacag
cgctcaccacgatctcctctgaactcgtgggtgaaaacaggagctagacagtga
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