Morus notabilis: 21390845
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Entry
21390845 CDS
T07292
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mnt
Morus notabilis
Pathway
mnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
21390845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21390845
Enzymes [BR:
mnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
21390845
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
21390845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
21390845
NCBI-ProteinID:
XP_010095607
UniProt:
W9QZE5
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MAVLQKRLFCSAVPKKWPVKQVTKTNFPESLEEIKRHISSSDFVAVSLQKTGSFSAPWHR
LLPFDTADTAYSKAKSSAERFQLFQFALCPFSLENSKLVAHPYNYLLYPRDELKLGMPSY
SFSCQSSHLTSMAREGFDFNACIYHGISYLSREQETAAKIRIGNPSPSTLVVDSSFAPSV
ADSIFMERLKSRVIRWKSACQKPKDSRNEVLMNSLRKLIMGSEYYGSRPSINLDVCSERQ
VQLVLEVLREFSDELVPLLIPAKSGGTQAVRVVLASSKEDKEFFEEELRCREEEENKKFR
GFREVIDLISASQKPVVSYNSLTDFTFIHSKFLAPLPPTIDEFASSLRPVFPHVLDVSHL
MKVVRPLRKVANIPVAISYLNNHFFAPVDIEISHQATENEGRNHGLNVIRICHLFAKLCS
ILKIGSSSTMSGNDVLLAPALEECTNVFNAFSTSSEESIDEDISVWTESTRKVSCEHLVF
LWGFGSGTTAGKLKSLLNKSHYVSSKEFDIRLVDKSCAILVFWQPGLAETFLDVMNNSEE
ITGSLRELVSEGLRAASYETYKRVCKLPIWEADLGESLDRALEDSDCLTEAHSKATPKEI
YWSNDDMINLDEL
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgttgcagaaacgcctcttctgcagcgcggtcccgaagaaatggccggtgaag
caagtgaccaagaccaatttcccagaatccttggaggagataaagcgccacatctccagc
tccgacttcgtcgccgtgtcgctgcaaaagacgggctcgttctcggcgccgtggcaccgc
ctcctgcccttcgacaccgccgacacggcctattccaaggccaagtcctccgccgagcgc
tttcagctcttccagttcgccctttgccctttctcccttgaaaactccaagctcgtcgct
cacccgtataactatttgttgtaccctagggatgaactgaaattggggatgccatcttac
agtttctcgtgccaaagttcgcatttgacctccatggctcgagaaggttttgactttaat
gcctgcatttatcacggtatatcttacttgtctagagaacaagaaactgcagctaaaatt
cggatagggaatccgagtcccagcactcttgtagttgattctagttttgcccctagtgtt
gctgattctatattcatggaaagattaaaatcacgagttattcgctggaagagtgcgtgt
caaaaacccaaggatagcagaaatgaggttctgatgaattcattaagaaaacttattatg
ggaagtgaatattatgggtctagaccatccatcaatttagatgtttgcagtgaacgtcaa
gtgcaacttgttctagaggtgttaagagaattctctgatgaacttgttcctttactaatc
ccagcaaagagtggaggaacccaggcagtccgtgtggttttagcaagctcaaaagaggat
aaggaattttttgaggaggagctgcgatgccgtgaagaggaagaaaacaagaaatttcgg
ggatttcgagaggtgatcgatttgatttctgcttcacagaaacctgttgtctcctacaat
tcccttactgactttacatttattcactcgaaattccttgctcctctacctcccaccata
gatgagtttgcgagctctttacgcccggttttcccccatgttcttgatgtcagccatctg
atgaaggttgttcgtcctctaagaaaagtggccaatatacctgtagctatttcctacctg
aacaatcatttctttgcgcctgttgatattgaaatctctcaccaagccacagaaaatgaa
ggcaggaatcatgggcttaatgtcataagaatatgtcatttatttgcaaagctctgctcc
attctcaaaattgggagcagttccaccatgtcggggaatgatgtacttttagctccggct
cttgaagagtgtacaaacgttttcaatgcattctctaccagctctgaagaatcaatcgac
gaggatatcagtgtctggacagagagcacaagaaaagtcagctgtgagcatttggttttc
ttgtggggatttggaagcgggacgactgctggaaagctgaagagcttgctcaacaagtca
cattacgtatcctccaaagagttcgatattcggttagtggataaaagttgtgccatcctt
gttttctggcaacctggcttggctgaaacctttctggatgttatgaataacagtgaagag
atcactgggtctttaagggagctggtttccgagggcctgagagcagcttcttatgagact
tacaagagggtctgtaagttgcccatatgggaagcagacttaggagagtccttggacaga
gcgttggaagattctgactgtctcacagaagctcattctaaagcaactcccaaagaaatt
tactggtccaatgatgatatgattaatctcgatgagctttga
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