Morus notabilis: 21391596
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Entry
21391596 CDS
T07292
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mnt
Morus notabilis
Pathway
mnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
21391596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21391596
03041 Spliceosome [BR:
mnt03041
]
21391596
03009 Ribosome biogenesis [BR:
mnt03009
]
21391596
03016 Transfer RNA biogenesis [BR:
mnt03016
]
21391596
Enzymes [BR:
mnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
21391596
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
21391596
Spliceosome [BR:
mnt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
21391596
Complex C
U4/U6.U5 tri-SnRNP related factors
21391596
Ribosome biogenesis [BR:
mnt03009
]
Eukaryotic type
Pre-60S particles
Helicases
21391596
Transfer RNA biogenesis [BR:
mnt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
21391596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
21391596
NCBI-ProteinID:
XP_024028391
LinkDB
All DBs
Position
Unknown
AA seq
991 aa
AA seq
DB search
MVDSESPSLGKRKEPEESEAPPPSQDSAMRSHNSTRTCVHEVAVPTGYVSSKDEAVHGTL
ANPVFNGEMAKSYSFSLDPFQKVSVACLERNESVLVSAHTSAGKTAVAEYSIAMAFRDRQ
RVIYTSPLKALSNQKYRELSEEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQP
CHVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFREDNFVKLQDTFSKQKIGESNNRSA
NGRAGGRMARERAASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMAKLDFNTQ
EEKDTVEHVFRNAILCLNEEDRELPAIELMLPLLQRGIAVHHSGLLPVIKELVEILFQEG
FVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDERGI
CIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQF
QYEKALPDIGKKVSKLEEEVAMLDASGEAAVAEYHKIKLDIAQLEKKMMSEIMRPERVLY
FLQPGRLVRIREGGTDWGWGVVVNVIKKPSTGLGSISSRGGIYIVDTLLHCSPGSSENSS
RPKPCPPRPGEKGEMHVVPVQLPLISALGRLRISVPPDLRPLEARQSILLAVQELGNRFP
QGLPKLNPVSDMGVEDAEIVELVKQIEELEKQLYSHPLHKSQDVNQIKSFQRKAEVNHEI
QLLKSKMRDSQLRKFRDELKNRSRVLKKLGHIDANGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQIAALASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEIQHECKLE
INVDEYVESTVRPYLMDVIYCWSKGANFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAA
QAVGEVNLENKFAAASESLCRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggtggattccgaatcgccgtccctcggtaagcggaaagagcccgaagagtccgaagct
cctcctccttctcaagactctgcaatgcgcagccacaattcgactcgcacgtgcgtccac
gaggtcgccgtccccaccggctatgtctcctccaaggacgaggctgtccacggaacccta
gccaaccctgtcttcaatggggaaatggccaaatcctacagcttctccctcgaccccttt
cagaaggtctccgtcgcctgcctggagcgcaacgagtccgttctcgtctccgcccacacc
tccgccggcaaaactgctgtcgccgagtactccattgccatggccttccgcgatcgccag
agagtcatttacacttccccattgaaggcgttgagcaaccagaagtacagagagctcagc
gaggagtttcaagacgtcggcttgatgaccggcgacgtcacgctcagccctaacgcctct
tgccttgtcatgaccaccgagattctccgcggaatgctctacagaggctccgaggttctc
aaggaagtcgcttgggtcatcttcgatgaaattcactacatgaaggatcgagaaagagga
gttgtttgggaggagagcatcatattcttgccaccggcaatcaagatggttttcctatca
gcaacaatgtcgaatgccaccgagttcgcagagtggatctgcaacctgcacaagcagccg
tgccatgttgtgtacacggatttccggccaacccctttgcagcattatgtgtttcctgtt
ggtgggaatgggttataccttgttgtcgatgagaacgaacagtttagggaggataatttt
gtgaagttgcaagacacattctcaaaacagaagattggtgaatccaacaacaggagtgca
aatggcagggcaggtgggagaatggcaagagaaagggcggcttctgggggttctgacata
ttcaaaatagtgaagatgatcatggaaagaaagttccagccagttattattttcagcttc
agtagaagagagtgtgaacaacatgccatgtccatggccaagcttgatttcaacacccaa
gaggaaaaggatacagtagaacatgtttttcgtaatgccattctctgcttgaatgaggaa
gacagagaattacctgctattgagttgatgctgccgctacttcagcgaggcattgctgtt
catcattctggccttcttcctgttatcaaggagttggtagagattcttttccaagaagga
tttgtgaaggcactttttgccacagaaacgtttgctatgggtttgaatatgccagcgaaa
actgttgttttcacagcagttaagaagtgggatggggatagtcatcgtttcattgggtca
ggtgagtatatccagatgagtggaagagctgggcgtcgtggcaaagacgagcgtggtatt
tgcattataatggtcgatgagcagatggagatgaatactctcaaggacatggttttgggt
aaaccagctcctttagtgagtacctttagactgagttactactccattttgaatctgatg
agccgtgctgaaggccagtttactgccgagcatgtgataaagaattcattccatcagttc
cagtatgagaaggctttacctgatataggcaaaaaggtttcaaagcttgaggaggaagtt
gcaatgctcgatgcatcaggagaggctgctgttgctgaatatcataaaatcaaacttgat
atagcccaacttgagaaaaagatgatgtcagaaattatgaggcctgaaagagttctatac
ttccttcaacctggtcgactggtcagaattagagaaggtggaacagactggggttgggga
gttgtagttaatgttattaagaagccatcgacagggttgggttcaatctcttcacgcggg
ggtatttatatagtggataccttgctacactgttctcctggttcaagtgagaatagttcg
cggccaaaaccatgtccacctcgtcctggagagaagggtgaaatgcatgtggtccctgtg
cagttaccactaatttctgctctcggcagactcaggatatctgttcctcctgatctgcgg
ccattggaggcacggcaaagcattctgcttgcagtacaggaactgggaaatcgttttccc
caaggtcttccaaagttgaatccagtatcggacatgggcgttgaagatgctgaaatcgtg
gaattggtcaagcaaatcgaggagcttgagaaacagctttattctcatccactacataag
tcccaagatgtgaatcaaattaagtcctttcagaggaaagcagaggtgaatcatgaaatt
caactacttaagtcaaagatgcgtgattctcagcttcgaaagttccgagatgaactcaag
aaccgatcacgagtcttgaaaaaacttggtcatattgacgccaatggtgttgtacagtta
aaggggagggcggcctgcttgattgacacaggggatgaactcctcgttaccgagctgatg
ttcaatgggacattcaacgatcttgatcatcaccaaattgcggctcttgcaagttgtttt
attccgggagataaatcaactgagcagatacaattgaggacagaacttgccagaccatta
cagcaacttcaagacagtgcaagaaggatagcagagatacaacatgaatgcaaactagaa
ataaacgtggacgagtacgtggaatcaacagttaggccatatttgatggatgtgatatat
tgttggtcaaagggtgcaaattttgctgatgtcatacaaatgactgacatttttgagggt
agtatcattcgaagtgctagaaggcttgatgagtttttaaaccagttgcgtgccgcagct
caagcggtgggagaagtcaatttagagaacaaatttgccgcagcaagcgaaagcctctgt
cggggtataatgtttgcgaattccctgtatctgtaa
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