Morus notabilis: 21394245
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Entry
21394245 CDS
T07292
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mnt
Morus notabilis
Pathway
mnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
21394245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21394245
03041 Spliceosome [BR:
mnt03041
]
21394245
03009 Ribosome biogenesis [BR:
mnt03009
]
21394245
03016 Transfer RNA biogenesis [BR:
mnt03016
]
21394245
Enzymes [BR:
mnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
21394245
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
21394245
Spliceosome [BR:
mnt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
21394245
Complex C
U4/U6.U5 tri-SnRNP related factors
21394245
Ribosome biogenesis [BR:
mnt03009
]
Eukaryotic type
Pre-60S particles
Helicases
21394245
Transfer RNA biogenesis [BR:
mnt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
21394245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
HHH_8
Motif
Other DBs
NCBI-GeneID:
21394245
NCBI-ProteinID:
XP_024023551
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MGSLKRKSDENPSGETPQKQFHRDNGLLGRLDDEPVACLHDVSYPDGYIPPPSSSSSGKE
GLEPAKVFPFSLDPFQSEAIKCLGDGESVMVSAHTSAGKTVVASYAIAMSLRNKQRVIYT
SPIKALSNQKFREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAW
VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKIHRQPCHIVY
TDYRPTPLQHYIFPSRGDGLYLVVDENGKFREDSFQKGLNALVPASEGERKKENGKWQKG
LVMGRLGEESDIFKMVKMIIQRQYDPVILFSFSKRECEALAMQMAKMDLNGEDEKTNIET
IFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDKRGVCILMVDEK
LEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRCEDGDPENLLRNSFYQFQADRALPDLE
RQVQDLELERDSIIIEEEDSLKNYYNLLQQYESLKKDIHDIVFSPKYCLPFLQSGRLVSI
KCTRSEEISQSFSIKDQVTWGVIINFQKVKTASEDDASRKPEDSSYTVDVLTRCVVNRDR
IAKRTVKIVPLKEPGEHVVVSLSLSQINSLSSLRVHIPNDLLPQEARENTMKKISEILSR
FGEKGIPLLDPEDEMNIKSSSYQKAARRIEALESLFDKHEVAKSPLIEQKLKAFHMKQEL
TAKIKSIKKTMRSSSALAFKDELKARKRVLRRLRYVTSDDVLELKGKVACEISSADELTL
TELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAAKPREELDLLFVQLQDIARRVANVQLE
CKVQIDVESFATSFRPDIMEAVYAWAKGSKFYEIMSVTPVFEGSLIRAIRRLEEVLQQLI
EAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgttaaagagaaagtcggacgaaaacccatctggagaaactccccagaaacag
tttcacagagacaatggtttgttggggagacttgacgatgaacccgtcgcttgcttgcat
gacgtttcttacccagatggttatattcctcctccttcttcatcttcatctggtaaagaa
ggtttggagcctgcaaaagtcttccctttcagtctcgatccttttcagtctgaagccatc
aaatgccttggagatggagaatccgtcatggtgtctgcccatacatcagctggaaaaact
gttgtagcctcatatgctatagctatgtctttgcgaaataaacaacgggttatatacact
tccccaatcaaagcactcagcaaccaaaagtttagggagttcaaagaggaattttcagat
gttggattgatgacaggggatgtaactattgatcccaacgcatcatgcttggttatgacc
acagagatttggcgtagtatgcaatacaaaggatcagagataacacgagaggtggcttgg
gtcatctttgacgaggtacattacatgcgtgatagggaaagaggtgtggtatgggaggag
agcattgttatggccccaaagaattctcgatttgtgttcctctcggcaactgtgcccaat
gcaaaggaatttgctgattgggttgcaaagattcacagacaaccatgtcacattgtttat
acagattataggccaacacctcttcagcattatattttcccttccagaggtgatggtctc
tacttggtggtggatgaaaatggaaaatttcgtgaagatagctttcagaagggtttaaat
gcgcttgttcccgctagtgagggtgagaggaaaaaggagaatggaaagtggcagaaaggc
ttggtaatgggtcggcttggtgaagaaagtgacatctttaaaatggttaaaatgatcatt
cagcgtcagtatgatcctgtcatactcttcagttttagcaaaagggaatgtgaagctctt
gcaatgcagatggcaaaaatggatctaaatggtgaggatgagaaaacgaacatagagacc
atattctggagtgctatggatatgctttccgatgacgataagaagttacctcaggtttca
catatgttacctcttctgaagcgtggaataggagtgcatcattctggcttgcttcctatt
ttaaaagaagtaattgagatattatttcaagaagggctgattaagtgtttgtttgctaca
gagacatttagcatagggttgaacatgcctgcaaagaccgttgtgtttaccaacgtccgt
aagtttgatggagataagttcagatggatatctagtggagagtatatacagatgagtggc
cgtgcgggtcgtcgaggtattgataaacgtggagtatgcatactcatggtggatgaaaag
ctcgaaccatctacggcaaagatgatgctgaaaggaagtgctgattgtttaaacagtgcc
ttccacttaagctacaacatgcttttgaatcaattgcgctgtgaagatggtgacccagag
aatttgctccgcaattctttctatcagtttcaagcagaccgtgcacttcctgatcttgag
agacaagtacaggatttggagctagaaagggattcaattataattgaggaagaagatagt
ttgaagaattattacaatctgttacagcaatacgagagtttgaagaaggatattcacgat
attgttttttctccgaagtactgcttaccctttttgcaatctggtaggcttgtttccatc
aagtgcactaggagtgaggaaatttcccagtcattctctatcaaggaccaggtcacatgg
ggagtgataataaatttccaaaaggtgaagacggcctccgaagatgatgcaagtagaaaa
ccagaagattcaagctacacggtggatgttcttacaagatgtgtggtgaacagagataga
attgcgaagagaactgttaagattgtgcctttaaaggagcctggggaacatgttgttgtt
tctctttctctttctcagattaatagtttaagcagtcttcgtgtgcatataccaaatgat
cttttgccccaagaagctcgggagaacacaatgaaaaagatttcagaaatcctttcaaga
tttggtgagaagggaattcctctcctggatccagaagatgagatgaatattaaaagcagc
tcataccaaaaggcagctcgtaggatagaggctttggagagcctctttgacaagcatgaa
gtggcaaaatctcctcttatcgagcaaaagctcaaagcatttcacatgaaacaagaattg
acagcaaaaatcaagtcaattaagaaaacaatgcgttcttctagtgcattggcttttaaa
gatgaacttaaagcaaggaaacgagttcttcggaggctaagatacgttacgagtgatgat
gttttagagctgaaggggaaggttgcttgtgaaattagtagtgctgacgagttgaccctt
accgagctaatgtttaacggtgttctaaaggacattaaggttgaagagatggtatctctc
ctgtcttgttttgtgtggcaggaaaaacttcaagatgcagcaaagcctagagaagaactt
gacctgctttttgtacaattacaagatatagctcgcagagttgctaatgttcagcttgag
tgcaaggttcaaattgacgttgagagttttgcgacctcatttcgacccgatatcatggag
gctgtatatgcttgggcaaaaggttcaaaattttatgagatcatgtcagttactccggtt
ttcgagggtagcttgatcagggcaattaggagactggaggaagtccttcagcagcttatt
gaagcagctaaatctattggagaaactgagcttgaagccaaatttgaggaggctgtttcc
aagatcaagagggacattgtgtttgccgcttctttatatttgtag
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