Morus notabilis: 21394881
Help
Entry
21394881 CDS
T07292
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mnt
Morus notabilis
Pathway
mnt03013
Nucleocytoplasmic transport
mnt03015
mRNA surveillance pathway
mnt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
21394881
09122 Translation
03013 Nucleocytoplasmic transport
21394881
03015 mRNA surveillance pathway
21394881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21394881
03041 Spliceosome [BR:
mnt03041
]
21394881
Enzymes [BR:
mnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
21394881
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
21394881
Spliceosome [BR:
mnt03041
]
Complex C
Other components
EJC/TREX
21394881
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
21394881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
21394881
NCBI-ProteinID:
XP_024024578
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETRDNDVYDEELVDYEEEDEKAPDSVGAKVNGEAPKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLAECNFPSICIHSGMSQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaaccagggacaacgatgtctacgacgaagagctcgttgactacgaagaagaa
gacgagaaggcccccgactccgtcggcgctaaagtcaacggggaagcccctaagaaggga
tatgttggaatacacagttccgggttccgagacttccttttgaagccagagcttcttcga
gctattgttgactcggggtttgagcatccctctgaagtgcaacatgaatgcatccctcaa
gcaattctgggaatggatgttatatgtcaagctaaatctggaatgggaaaaactgctgtt
tttgttctgtcatccctccagcaaatagaccctgtggcaggacaagtttctgctcttgtt
ctgtgtcatacaagggagttggcttaccagatctgtcacgagttcgagaggttcagtaca
tacttgcctgatctcaaggttgctgtcttttacggtggtgtcaatatcaaactccacaaa
gatttactgaaaaacgaatgtccccatattgttgttggcactcccgggagaatcctagca
ctggccagagataaggatctttcattgaagaatgtgaggcatttcattctggatgaatgt
gataagatgcttgaatcacttgacatgaggagggatgtgcaggaaattttcaagatgaca
cctcatgataagcaagtcatgatgttttctgcaacactaagcaaagaaatccgaccggtt
tgcaagaaatttatgcaagatcctatggaaatctatgttgatgacgaggccaagttgact
ctgcatgggcttgtacagcactacatcaagttgagtgagtcagagaaaaaccgcaagttg
aatgatcttcttgatgcattggacttcaatcaagttgttatttttgttaaaagtgtgagc
agagcagccgagctgaacaaattgcttgctgagtgtaattttccctctatatgcattcat
tctggcatgtcccaggaagaaaggttgaagcgctataaaggtttcaaggaggggcagaat
aggattctcgttgctacagatttggtcggcagaggaattgacattgaacgtgttaacatt
gtcatcaactacgacatgccagattcagctgacacttaccttcacagggtcggtagagct
ggtaggtttggtaccaaagggcttgccatcacatttgtttcttctgctgctgattctgat
gtgctcaacgatgttcaggagaggtttgaggtggatataaaggagcttcctgagcagatt
gacacttctacatacatgccatcgtaa
DBGET
integrated database retrieval system
