Morus notabilis: 21396162
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Entry
21396162 CDS
T07292
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
mnt
Morus notabilis
Pathway
mnt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
21396162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnt03021
]
21396162
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21396162
Transcription machinery [BR:
mnt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
21396162
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
21396162
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
MMS1_N
Motif
Other DBs
NCBI-GeneID:
21396162
NCBI-ProteinID:
XP_024029666
LinkDB
All DBs
Position
Unknown
AA seq
1451 aa
AA seq
DB search
MSFAAYKMMHWPTGIENCAAGFVSHSRADFVPRIPPIQSDDLDSDWPAGRRETGPVPNLV
VTAGNVLEVYVVRLQEEDDTRSSRAPAESRRGGLMDGLSGASLELVCHYRLHGNVQTIAV
LSSGGGDGSRRRDSIILSFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWLYLKRGRESFA
RGPLVKVDPQGRCAGVLAYNIQMIMLKAAQAGSGLVGEEDALGSGGAVSARIESSYIINL
RDLDMKHIKDFVFVHGYIEPVMVILHERELTWAGRVLWKHHTCMISALSISTTLKQHPLI
WSAVNLPHDAYKLLAVPSPIGGVLVICANTLHYQSQSNSCTLALNSYAVSVDSSQEMRRA
PFSVELDAANATWLSNDVVLLSTKAGELLLLTLVYDGRVVQRLDLSKSKASVLTSGITTI
GNSLFFLGSRLGDSLLVQFTYGLGTSMLSSGLKDEVGDIEGDAHLAKRLRRSSSDVLQDM
TSGEELSLYVSAPNNSESTQKSFSFTVRDSLVNVGPLKDFSYGLRINADPNATGVAKQSN
YELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSTRSHDSSKLVAADDE
YHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVVQVYERGARIL
DGSFMTQDLSFGPAPSESSSGSENAVVTSVSIADPYVVLRMSDGSIRLLVGDPTSCTVSV
STPADFESSKSIISACTLYRDKGPEPWLRKTSTDAWLSTGVDEAIDGADETLQDQGDIYC
VVCYESGSLDIYDVPSFNYVFSVDNFISGRPHLVDAFVQEQPKDLQKATNKNSEESAGQG
RKENVQNMKIVELAMQRWSGKHSRPFLLGILTDGSILCYHAYLFEGPESTSRTEDSVSSR
NSSGSRLRNLRFVRVPLDSYAREETSDGMPCQRISVFKNIAGYQGLFLSGSRPAWFMVFR
ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSEGILKICQLPSITSYDNYWPVQKIPL
KGTPHQVTYFAERNLYPLIVSVPVPKPLNQVMSSLLDQEVGHQFENPNLSPDDLNRTYTI
DEFEVRILEPERSGGPWQTKVTIPMQSSENALTIRVVTLFNTTTNENETLLAIGTAYVQG
EDVAARGRIILYSLGKDSDNSQNLVSEIYSKELKGAISALASLQGHLLIASGPKIILHKW
TGTELNGIAFFDAPPLYVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLSLLAKDFGSLD
CFATEFLIDGSTLSLVVSDDQKNIQIFYYAPKMSESWKGQRLLSRAEFHVGAHVTKFLRL
QMLPTSTDRTGSTPGSDKTNRFALLFGALDGSIGCIAPLDELTFRRLQSLQKKLVDAVPH
VAGLNPRSFRQFCSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHLIGTTRSQILSN
LNDLFLGTSFL
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgcggcgtacaaaatgatgcactggccgacggggatcgagaactgcgccgcg
gggttcgtgagtcactcccgagccgacttcgtcccccgcatccctcccatccagtccgac
gacctcgactccgactggcccgccggccgccgcgaaactggccccgtccccaacctcgtc
gtcaccgccggcaatgtcctcgaagtctacgtcgtcagactccaagaagaagacgacacc
agaagctccagggctccggccgagtccagacgcggtggactcatggacggcctctccgga
gcttctctggaactcgtttgccattacaggttacatggtaatgtccaaacaatagcggtt
ttatcttctggaggtggcgatggttctaggagaagagattctataatcttgagctttcag
gacgccaaaatttctgttttggagtttgatgattctatccatggacttcgtacaagctct
atgcactgttttgagggtccagagtggctttatctgaaaagaggtagagagtcatttgca
agaggtccattggtaaaggttgatcctcaaggaagatgcgcaggcgttcttgcttataat
atacaaatgataatgctgaaggctgctcaggctggttctggtttggttggcgaagaggat
gctttgggttcaggaggtgcagtttctgctcgtattgagtcatcttacataattaatttg
cgagatttagacatgaagcatataaaggattttgtttttgtacatggttatattgagcct
gtgatggttatccttcatgagcgggagcttacttgggctgggcgtgtcttgtggaagcat
catacttgtatgatttcagcgcttagtattagcacaactttgaagcagcatcctctgatt
tggtcagctgttaatctcccacatgatgcttacaagttacttgcagttccatcgccaatt
ggtggtgttcttgtgatttgtgcaaatactcttcattatcagagtcagtcaaactcatgt
acgttggctttaaacagctatgcagtttctgttgatagcagtcaggagatgcgaagagct
ccttttagtgtggagcttgatgctgccaatgctacttggttatcaaatgatgtagtcttg
ctgtcaacaaaagctggggagcttttactgctgactcttgtttatgatggacgggttgtg
cagaggcttgatctttcaaagtctaaagcttcagtacttacatcgggaattacaacaata
ggaaattcattattttttttgggaagtaggctgggagatagtttgcttgtgcagtttact
tatggattagggacctcaatgttgtcttctggtctgaaggatgaggttggggatattgaa
ggagatgctcatttagcaaagcgcttgcgaagatcatcttctgatgtattgcaagacatg
actagtggcgaggagctctctttatatgtttcagctccaaataactcagaatcaactcag
aagtcattctcatttactgtgagggattcattggtgaatgttggtcctttgaaggacttc
tcctatggtttaaggatcaatgcagatcccaatgcaaccggagttgccaaacagagtaac
tatgagctggtttgctgttctggtcacggaaagaatggcgctctctgtgttcttcgacag
tcaattcgcccagaaatgattactgaggttgaattaccaggttgcaaaggaatttggacc
gtttaccacaagagcacacgtagccatgactcttccaaacttgttgccgctgatgatgag
taccatgcatatttgattataagtctggaggctcggacaatggtacttgaaactgctgat
cttctgacagaagttactgaaagcgttgactattatgtgcaaggaagaacaattgctgca
gggaatttgtttggaaggcgccgagttgtgcaagtttatgaacgtggtgctcgtattcta
gatggttcttttatgactcaggatttgagttttggacctgcaccttctgaatcgagttct
ggttctgaaaatgccgtagtgacttcagtttccattgcggatccatatgtggtattgaga
atgagtgatggaagcattcggctccttgtaggagatcccacttcatgtactgtttctgta
agtactccggctgactttgagagctcaaaaagtataatatctgcatgcacactgtatcgt
gataaaggaccagagccatggctccgtaagacaagtactgatgcatggctttcgacaggt
gttgatgaggccattgatggtgctgacgagacattacaggatcagggtgatatatattgt
gttgtttgttatgaaagtggttcccttgatatatatgatgttcctagtttcaattatgtt
ttttccgtggataactttatatccggaaggccccatctagtcgacgcatttgtgcaagaa
caacctaaggatcttcaaaaagcaacaaacaaaaattctgaagaatcagctggtcaaggc
aggaaagaaaatgtacagaacatgaaaattgttgagttggccatgcagagatggtcagga
aagcatagccgcccttttctccttgggatactgactgatggatcaattctttgttatcat
gcgtacttgtttgaaggtccagagagtacctctagaactgaagattcagtttcttcacgg
aattcttctggttcaaggctcagaaatctgagatttgttcgagttccattggactcatat
gctagagaggaaacgtcagatggaatgccatgccaaagaattagtgttttcaagaatatt
gctggttatcaggggttatttttgtctgggtcaagaccagcttggtttatggtattcaga
gaacgtcttcgtgttcatcctcagctatgtgatggttcaattgtagccttcactgttctt
cacaatgtgaattgcaaccatgggttcatatatgttacatcagagggtattttaaaaatt
tgccaattgccatctataacaagctatgataactattggccagtgcaaaagattccattg
aaaggcaccccacatcaagttacgtactttgcggagaggaatttatacccacttatagtt
tcagttcctgttcctaagccactgaatcaagttatgtcatctttgcttgatcaagaagtt
gggcatcagtttgagaatcctaatttgagtcctgatgatctgaatcggacttacactatt
gatgaatttgaggttcggattctcgagccagaaagatctgggggcccttggcagactaag
gttaccattccaatgcaaagttctgagaatgccctaactatccgagtggtcacattgttt
aacacaacaacaaatgagaacgaaacacttctagccattgggactgcttacgtgcaaggg
gaggatgtggctgctagaggaagaattattttgtattcactaggaaaagatagtgataat
tcccaaaatttggtttcagagatttactccaaggagttgaagggtgctatatctgcttta
gcctctcttcaaggccatttgctaatagcttctggtcctaaaattattttacacaagtgg
actggtactgagttgaatggaattgcatttttcgatgcaccaccattatacgttgtgagc
ttgaatattgtcaaaaactttattcttattggtgacgtccacaaaagcatatactttctt
agttggaaggagcagggagctcaactcagtttattggccaaggattttggctcccttgat
tgttttgcaacagagtttctaattgatggaagtacactgagccttgtagtttcagatgat
cagaagaacatccagatattttattatgcaccaaagatgtctgaaagttggaaaggacag
aggcttctttcaagggctgaatttcatgttggtgcccatgtaaccaagttcttgcggttg
caaatgcttcctacttcaactgatcgcacagggtccactccaggctcagataaaaccaat
cgctttgcattactttttggtgccctggatggcagtattggctgtattgcaccacttgat
gaactaacatttcgtagactgcagtcattacagaaaaagcttgtcgatgctgttccacat
gtggctggtctgaatcctagatcgtttcgccagttttgctcaaatggaaaggctcaccgg
cctggaccggacagcatagttgattgtgaactgctatgccattatgagatgcttcctttg
gaggaacagctggaaattgctcacctgatagggacaacccgttcacaaattctttcaaac
ttaaatgacctttttctaggaacaagcttcttgtaa
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integrated database retrieval system
