Morus notabilis: 21406115
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Entry
21406115 CDS
T07292
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mnt
Morus notabilis
Pathway
mnt03013
Nucleocytoplasmic transport
mnt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
21406115
03015 mRNA surveillance pathway
21406115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21406115
Enzymes [BR:
mnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
21406115
5.6.2.5 RNA 5'-3' helicase
21406115
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
21406115
mRNA cycle factors
Common to processing body (P body) and stress granule
21406115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
21406115
NCBI-ProteinID:
XP_010110516
UniProt:
W9SU51
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MDSQQSNLFDAASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSSVSWPTPSDSLSDPA
DRGGGPGGTDHQSDASPVSTSGPGIASKGRPGSSASNQVVDSLAAGMSGLNFEDTGDDDS
YDYGKGDFTVHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDE
PQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVMIRWDIGLNKKRVAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPS
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNS
LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGVVPSDNYASVSPSNQ
NTERRSSRGRGSYIPPAPPNGTHKPGLHPAGYPMPRVPLPPFPGGPASQPYAIPTRGAVH
GPVGAVPHVPQPGTRGFGAGRGNAGAPIGSHLPHQQGTQQPIGNIGSTFNFPSLENPNSQ
PSVGGPLSQPGFVNNMPVQAATQNFRDGFSMAGMSQDFLGDDFKSQGSHVPYNVADFNTQ
ASQSGYGVDYVTQGAQGAFPGNFLNQSSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVCM
NDPSQDDASQSHYGVANANQLQSQGFMNSLYSQPFTHYNTQPMNLQAPQQQPQQSQSSQN
QKIHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagcaaagcaatctcttcgacgcggcgtctcagcctgacaccgccaacgac
gcctacacattcctcgaatttaacacgcaaggtgaggacttcgattacccggagtttcgc
gacccgattcgctcctccgtttcctggcccacgccctccgattccctctcggaccccgcc
gaccgcggcggtgggcccggagggactgatcaccagtccgacgcctcgccggtatccacc
tccgggcccgggatcgcctccaagggccggcccggcagcagcgcgagcaatcaggtggtc
gactccctagcggcggggatgagcggtctcaacttcgaggacaccggagacgacgacagt
tacgattacggaaagggggatttcaccgtgcacgcgtgccgctattgcggcgtctcgaac
ccggcctgcgtcgtgaggtgcaatgtgccgtcgtgtcggaagtggttctgtaattcgagg
ggaaacacgtccggttcgcacattgtgaaccacctggttcgagcaaagcacaaagaagtt
tgccttcataaagacagtcctttaggagaaacaatccttgagtgctataactgtggatgt
cgcaatgtgttccttcttgggtttatatcagccaagacagagagtgtggttgtgcttctt
tgtagggaaccttgcttaagcgtcaatgcattgaaggatatgaattgggacctgagccag
tggtgtcccttgatcgatgataggtgtttcttgcagtggcttgttaaggtgccatctgaa
caggagcagttgagagctcgccaaattagtgctcagcaaataaataaggtagaagaactt
tggaaaacaaatcctgatgcctcacttgaagatcttgagaagcctggtgtggatgatgaa
cctcagcctgtagtcttgaaatacgaagatgcataccagtatcaaaatgtatttgcacca
cttattaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggataat
gtcatgattcgttgggatattggtcttaacaaaaagcgcgtagcttattttgttttccca
aaggaggacaatgagttgcggcttgtacctggagatgagttgcgattacgttattctggg
gatgccgctcatccagcatggcaatcagttgggcatgtgatcaagttaactgcacaggag
gaagttgctcttgaacttcgtgccagtcagggagtgccagttgacgtgaaccatggtttt
agtgttgactttgtttggaaaagtacaagctttgatcggatgcagggagcaatgaaaacc
tttgcagtggatgagaccagtgttagtgggtatatataccatcacttgttaggccatgaa
gttgaggttcagatggttcgtaacacactacctcgtcgtttcggtgcacctggtcttcca
gagctaaatgcatctcaagtttttgctgtaaagagtgttctgcagaagcctataagtctc
attcagggccctcctggtacgggaaaaaccgttacttcagcagcgattgtgtatcacatg
gccaaacaaggccagggacaggttttggtttgtgcccctagtaacgtggctgtagaccaa
ctagctgaaaagataagtgctacaggattaaaggttgttaggctttgtgcaaagtcaaga
gaagctgtaagttctcctgttgagcatttaacccttcactaccaggttcgtcatctggac
acgtccgaaaagagtgaactacacaaattacaacaattgaaagatgaacaaggagagttg
tccagcagtgatgagaaaaaatataaagcactgaagcgggctacggaaagggagatttct
cagagtgctgatgtcatatgttgcacgtgtgttggagctggagaccctcgattggcaaat
tttaggttccgccaggtgcttattgatgaatctactcaggcaacagaacctgaatgcctt
attcctctggttcttggtgtaaagcaggtcgttcttgtcggtgatcattgccagcttggt
ccagtgattatgtgcaaaaaagcagctcgtgctgggctagcacaatctctctttgaacgc
ttagttctacttggtgtgaaaccaattaggttgcaggttcaataccgtatgcatccatct
ctgtcagaatttccttctaacagcttctatgaagggacattgcaaaacggagtaactatc
aatgaaaggcagtcatctggcattgattttccttggccagttcccaaccgccctatgttc
ttttacgtgcagatgggacaagaggagataagtgctagcggaacatcttatctgaatagg
accgaggcggctaatgttgaaaagattgtaaccacattcttaaggagtggcgtagttcct
agtcagattggggtcatcactccatacgagggacaaagagcttatattgtaaactatatg
tcaagaaatggtgctctgaggcagcagctttacaaggaaatcgaggttgcaagtgttgat
tcatttcagggaagggaaaaagattacataatcctgtcatgtgttcggagtaatgaacat
cagggcattggattccttaatgatccgcgtaggctcaatgttgctttaacacgtgctcga
tatgggattgtgattcttggaaacccaaaagttttaagtaaacagccgttgtggaatagc
ttactgactcactacaaggaacatgagtgcttggttgaagggcctctaaataacctgaag
cagagtatggtccaatttcaaaagcctaaaaagatatataatgatcgtcgtcttttcttt
ggtggtggtcctggagttgtgcctagtgataattatgcatctgtttccccttctaaccaa
aatactgaaagaagaagcagtcgtggtaggggttcttacatacctcctgcaccacccaat
ggaacccataagcctggcttgcatcctgctgggtatccaatgcctcgagtaccccttcca
ccatttcctggtggccctgcttctcaaccatatgctattccaactcgtggagctgtacat
ggaccagttggagcagtgcctcatgttccccagcctgggacccgaggtttcggtgctgga
cgtggcaatgctggtgctcctattggcagtcatcttccccaccagcaagggactcagcaa
cctattggaaatattggatccacctttaatttcccctctttggaaaatccaaatagtcag
ccatccgtgggtggtccattatctcaacctggatttgttaataatatgccagttcaagcg
gcaacccaaaattttagggatggattttccatggctggcatgtctcaggacttcttgggt
gatgactttaagagtcagggatcacatgttccttataatgttgctgacttcaatactcag
gcttctcaaagtggatatggtgttgattatgtcacacaaggagcacaaggtgcctttcca
ggaaactttctgaaccagagctctcaggctggctattctcgctttggtagtgggaatgac
ttcatgtctcaggactatatggctcatggatcacaaggtttgtttactcaagtttgcatg
aatgatccatctcaagatgatgcatcacagagccactatggtgtggccaatgccaatcaa
cttcagtctcagggctttatgaattctctatattctcagcccttcacccattacaacaca
cagccaatgaacttgcaggccccacagcagcagcctcagcagagccagagctctcaaaat
cagaaaatccactacaatggttga
DBGET
integrated database retrieval system
