Morus notabilis: 21406503
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Entry
21406503 CDS
T07292
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
mnt
Morus notabilis
Pathway
mnt03022
Basal transcription factors
mnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
21406503
09124 Replication and repair
03420 Nucleotide excision repair
21406503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnt03021
]
21406503
03400 DNA repair and recombination proteins [BR:
mnt03400
]
21406503
Transcription machinery [BR:
mnt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
21406503
DNA repair and recombination proteins [BR:
mnt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
21406503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Plant_vir_prot
Motif
Other DBs
NCBI-GeneID:
21406503
NCBI-ProteinID:
XP_024018721
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MSSGEVIKRAKYKTSVKDPGTPGVLKMTEQKFLFNPNDPSSVTKLDVEFAHIKGHKHTKE
GSNKPPWLNLTHDQGGSYIFEFQSFADLHVYREFVGNALAKSGEAAKAASTAKVTSSTKV
ASEKSAVSFPDEQLSTAEMELRMNLLREDSELQKLHKQFVIGGVLTESEFWATRKKLLDV
DNRGKLKQRVGFKSTMILDTKPMADGRTNKVTFNLTPEIKYQIFVLKPAVHQAFLNLVPS
KMTEKDFWTKYFRAEYLHSTKNAITVAAEAAEDEELAIFLKEDNILAREARRKIRRVDPT
LDMEADLGDDYTHLPDHGIFRDGTKEISETQHEQYMRTLSQDLNRQGAVVLEGRTVDVDL
EDPRTVAEALVRSRQELDGDKTQERLDRLSRMTDIEDLREPLDHPFAPLCIKDPRDYFDA
QQANALKTLDDARNKMEQTKRNLSIDEAYGSLRDSISKIKTMGLSDPIVKPEVALSVLNG
LTQNISSSKFQLGKNSRESILDGLPNTTKHELMHHWMSIQELLRHFWSSYPITTTSLHTK
VSRLKDAMSQTYRQLEEIKESVQSDFRHKVSLLVRPMHQALDAAFQHYDADQQKRSSKGE
PLNGFV
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtggagaagtgattaagcgagccaaatacaagacttctgtcaaggatcctgga
actcccggtgttctcaaaatgactgaacaaaagttcctattcaatcccaatgatcccagt
tctgtcacaaagctggatgtggaatttgcacacatcaaaggtcataaacatactaaggag
ggatcaaataagccaccttggcttaatctcacccatgatcagggtggaagttacatattc
gagtttcaaagctttgctgatcttcatgtataccgagaatttgtgggaaatgcccttgcg
aagtctggagaagctgcaaaagctgcttctactgcgaaagtcacctcctctacgaaagtt
gcttctgagaaatctgcagtttcatttcctgatgaacaactcagcacggcagaaatggag
cttcggatgaatctattgcgagaagatagcgagttgcagaaacttcataaacaatttgtg
attggtggtgtgttgacagaatctgagttctgggcaacgaggaagaaactgcttgatgtg
gataaccgcggaaagttaaaacaaagggttggtttcaaaagtacaatgatattagatacc
aagcctatggctgatggtcggacaaacaaggttacatttaatttgacaccagagatcaaa
taccagatttttgttctaaaaccagctgttcaccaggcattccttaatcttgttcccagt
aagatgactgaaaaggacttttggacaaaatattttagagctgaatacctccatagtaca
aagaatgctattacagtcgctgcagaggctgctgaagatgaggaactggccattttcttg
aaggaagacaatattttggcaagagaagctcgtaggaagatcagacgggttgatcctact
ttagacatggaagcggatctaggggacgattacactcatcttcccgaccatggaattttc
cgtgacggtaccaaggaaataagtgaaacgcagcatgagcaatacatgagaactttgtca
caagatcttaaccgacaaggtgctgttgttcttgaagggagaactgtagatgtggacttg
gaagatccacgaactgtagctgaagcacttgtgagatcaaggcaagaacttgatggggat
aagacacaggagagacttgataggctttctcggatgactgatatagaggatcttcgagaa
cctctggatcatcctttcgccccactctgtatcaaggatcctcgcgactactttgatgca
caacaagctaatgcgcttaaaactttggatgatgcacggaataagatggaacaaacaaag
cgcaacctcagcattgatgaagcatatggctctttgagggattcgatatctaaaataaag
acgatgggattgagtgaccccatagtcaaacccgaagttgctctttcggttctaaatgga
ttgacccagaatatatccagctccaagttccaactagggaagaattctcgggagagtatt
ctggacggtttgcctaacacaacaaaacatgagcttatgcaccattggatgtccatacag
gaattactgagacatttctggtcttcatatcctattactacaacatctcttcacacaaag
gtgagcagattaaaggatgccatgtcacaaacttaccggcagcttgaggaaataaaggaa
tccgtgcaatccgactttcggcataaggtttcccttctagttcggccaatgcatcaggcc
ctggatgctgcttttcaacattacgatgcagaccaacagaagagatcgtcaaaaggagag
ccgctgaatggatttgtgtag
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