Morus notabilis: 21408471
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Entry
21408471 CDS
T07292
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mnt
Morus notabilis
Pathway
mnt03013
Nucleocytoplasmic transport
mnt03015
mRNA surveillance pathway
mnt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
21408471
09122 Translation
03013 Nucleocytoplasmic transport
21408471
03015 mRNA surveillance pathway
21408471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnt03019
]
21408471
03041 Spliceosome [BR:
mnt03041
]
21408471
Enzymes [BR:
mnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
21408471
Messenger RNA biogenesis [BR:
mnt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
21408471
Spliceosome [BR:
mnt03041
]
Complex C
Other components
EJC/TREX
21408471
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
21408471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
21408471
NCBI-ProteinID:
XP_024021858
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVRDNDGYEEELVDYEEEDQNAPNSASAKPSGDSAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKIAVFYGGVSIKIHKDLLKNECPHIVVGTPGRVLA
LARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLMETEKNRKLTDLLDALDFNQVVIFVKSVN
RAAELNKLLADSNFPSICIHSGMSQEERLKRYKNFKEGHSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcagagacaacgatggttacgaagaagagctcgtcgactacgaagaggaa
gaccaaaatgcccccaactccgcctccgccaagccctctggcgactccgccaagaagggc
tatgttggtatccacagttcgggtttcagagactttctgttgaagccagagcttctacga
gccatcgtcgattcgggatttgaacatccttcagaagtgcaacatgagtgcatccctcaa
gctatcttaggaatggatgtcatttgtcaagcgaagtcgggaatggggaaaactgctgtc
tttgtcctgtcaacacttcagcaaatagagccagttgctggccaggttgctgctctcgtt
ctctgccacacgagagaattggcttaccagatatgccacgaatttgagaggttcagtacc
tatttgcctgacattaaaattgcagtcttctatggtggtgtcagtatcaagattcacaag
gatttgctgaaaaatgaatgtccccatattgttgttgggacacctgggagggtattggct
ctagcaagagacaaggatcttgggctaaagaatgtgaggcattttattcttgatgagtgt
gataagatgctcgagtcgcttgatatgaggagagatgtgcaggagattttcaagatgact
ccgcatgataagcaagtgatgatgttttcagcaacactcagcaaagagattcgtcctgtg
tgcaagaaatttatgcaagatcctatggaaatctatgtagatgacgaggccaagttgact
cttcatggtcttgtccaacactacattaaattgatggaaacagagaaaaaccgcaagttg
actgatcttcttgatgctttggacttcaaccaagttgttatttttgtgaaaagcgtcaac
agggctgctgagttgaacaaactacttgctgatagtaactttccctctatctgcatccac
tctggaatgtctcaggaagagaggttgaagcgttacaagaatttcaaggaggggcattca
agaattcttgtagcaacagatttagttggaagggggattgatatcgagcgtgttaacatc
gttatcaattatgacatgccagattcagctgacacctatctgcatagggtgggcagagct
ggtagatttggcaccaaggggcttgcgattacgtttgtctcatcagcatctgactctgaa
gttcttaaccaggttcagtctaggtttgaggttgatataaaggagcttccagagcaaatt
gacacgtctacgtatatgcaagtatga
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