Morus notabilis: 21409262
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Entry
21409262 CDS
T07292
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mnt
Morus notabilis
Pathway
mnt03020
RNA polymerase
mnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
21409262
09124 Replication and repair
03420 Nucleotide excision repair
21409262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnt03021
]
21409262
03400 DNA repair and recombination proteins [BR:
mnt03400
]
21409262
Enzymes [BR:
mnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
21409262
Transcription machinery [BR:
mnt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
21409262
DNA repair and recombination proteins [BR:
mnt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
21409262
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
21409262
NCBI-ProteinID:
XP_024032848
LinkDB
All DBs
Position
Unknown
AA seq
1852 aa
AA seq
DB search
MDIRFPFSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETIMGGKPKPPAGLSDPRLGT
IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKIMVDEDDH
KFKQALKIKNPKNKLKKILDACKNKSKCEGGDDINVQGQESEEPVKKSRGGCGAQQPKLS
IDGMKMVAEYKSQRKKIDEQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII
SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLNRTSAWHAESESGYITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISRAKNDVKELIRKAQAKE
LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ
KLDSLKMKKTEFERVFRYEFDNETWNPTYMLPEHVEDLKTIREFRNVFDAEVQKLESDRL
QLGTEIATTGDNSWPLPVNLKRLIQNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVV
PGEDPLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREGFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFL
KPEASKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVRSYYEMPDEE
INPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGDLTDEAAEDDVFLKKIESNMLTEMSLRGIPDINKVFIKHGKVNKFDENDGFK
PENEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
YLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGT
PYHEGMMSPGYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY
NPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPF
NSGVSPDYSSSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSDKDDKDDRSTR
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggttccctttctcgccggcggaggtagccaaagtccgtacagtccagttc
ggcatcctcagcccggacgagatcaggcaaatgtcggttgtacagattgagcacggtgag
acgataatggggggcaagccgaagccgccggcgggtctgagcgaccctcggcttggtacc
attgacaggaagatgaagtgcgaaacttgcactgctaacatggccgagtgtcccgggcat
tttgggcatcttgagcttgccaagcccatgttccacattgggtttatgaagactgttctc
accattatgcgttgcgtttgcttcaattgctccaaaataatggtcgacgaggatgaccac
aagtttaagcaagctctgaaaataaagaacccaaaaaataagcttaaaaagattttggat
gcgtgcaagaacaaatcgaagtgtgaaggtggtgatgatattaacgtccaagggcaagaa
tctgaagaacccgtgaaaaagagtcggggtggctgtggtgcccagcagccaaagctgtct
atagatggaatgaaaatggttgccgagtacaaatcgcagaggaagaaaattgatgagcag
gaacagcttcctgaacctgtggagagaaagcagactcttactgcagaaagagttctgagt
gttttgaagagaataagtgacgaggattgtcagcttttgggcttgaatccaaagtatgct
cgtccagattggatgattctgcaagttcttccaatccctccacctccagttagaccttct
gtgatgatggacacatcctccaggagtgaggatgatttgactcatcaattggccatgatt
ataaggcacaatgaaaatctaagaagacaggagaggaatggttcacctgcccatatcatt
tcagagttcgcacagctgttacagttccatatagccacgtactttgacaatgagttgcct
ggattgccaagggctacacagagatcagggaggccaataaaatcaatatgcagtaggctt
aaagcgaaggaaggtcggattagagggaacttgatgggaaaacgtgtggatttttctgca
cgtacagttatcacccctgatccaaccattaacattgatgaattaggagtgccctggagt
attgctttaaatcttacatatccagagactgtgacgccatataacattgaaaggttgaag
gagcttgttgagtatgggccccatcccccacctggtaaaactggtgcaaagtacatcata
agagatgatggacaaaggctcgatcttcgttacttgaagaaaagtagtgatcatcatttg
gagctcggatataaggtggagcgccatttgaatgatggtgattttgtcttgttcaatcgt
caacccagtctccataaaatgtctattatggggcataggatcaagatcatgccatattca
actttccggcttaatttatccgtcacttcgccatacaatgctgactttgatggtgatgaa
atgaatatgcacgttcctcaatcatttgagactagggcagaagtactggagcttatgatg
gtgcccaaatgcattgtatcccctcagtcaaatcgacctgtgatgggaattgtccaggat
acactcttgggttgtcgtaaaatcacgaagagagataccttcatagagaaggatgttttc
atgaacatcttgatgtggtgggaggattttgatggaaaagttcctgctcctgcaattttg
aagccacggcctctttggactggaaaacaagtttttaatcttattattccgaaacagata
aatctgaacagaacttctgcctggcacgctgagtcggaaagtggatatataactccaggg
gatacattagttagaatagaaaagggagagctgctttctggaactctttgcaagaagacc
cttgggacatcttcaggaagtcttatacatgtgatatgggaagaggttggtccagatgca
gcccgcaagtttctgggtcatacacagtggcttgtcaactattggcttttgcagaatggt
tttagtattggtatcggagatacaattgccgatgcatcgaccatggaaaaaattaacgag
accatttcaagggcaaaaaatgacgtgaaagaacttatcaggaaagcccaagcaaaagag
ctagaagctgaacctgggcgcacaatgatggagtcatttgaaaacaaagtgaaccaggtc
ttgaataaggctcgtgatgatgctggaagtagtgcccaaaagagtttgtctgagagcaac
aatcttaaagctatggttactgcaggatctaaaggaagtttcattaacatctcacagatg
actgcttgtgtggggcagcaaaatgttgagggcaagcgaattccctatgggtttatagat
cgaacattgccccacttcaccaaagacgattatgggccagaaagtcgtggctttgttgag
aactcgtatctgcgaggactgaccccacaagagttcttttttcatgctatgggtggtaga
gaaggtcttatagatactgccgtgaaaacttctgagactgggtacatccagcggagactg
gtgaaagctatggaggatattatggtcaaatacgatgggacagtcaggaattcattgggg
gatgttattcaatttctctatggggaagatggaatggattctgtttggatagaatctcag
aaactggattctctgaaaatgaaaaaaacagaatttgagagggtttttaggtatgagttc
gataatgaaacttggaacccaacctacatgttacctgaacacgtagaggatctcaaaacc
attagagagtttcgcaatgtgtttgatgctgaagttcagaaacttgaatctgatagatta
caactgggaacagagattgctaccaccggtgataattcttggccattgcctgttaacctg
aagaggcttattcagaatgcacagaagaccttcaagatagatttccgaaggacttctgat
atgcacccaatggaaattgtagaagctattgataagctccaggagaggctgaaggttgtt
cctggtgaggatccgttgagtgtcgaagctcaaaagaatgctacattgttttttaacatt
ttgctccgaagtacttttgctagcaaaagggtgctggaggaatacaggcttactcgagaa
ggatttgaatgggttattggagaaatagaatctcgtttcctacagtcacttgtagcccct
ggtgaaatgataggttgtgttgctgcacagtcaattggtgagcctgctactcagatgact
ctcaataccttccactatgctggtgtgagtgccaagaatgttactttaggtgttcccagg
ttgagagaaattataaatgtagccaagagaatcaaaactccatctctctctgtctttttg
aagcctgaagcaagtaaaaccaaagagagggccaaaactgttcagtgtgctttggagtat
accactctccggagtgtaacgcaagctacagaagtttggtatgatccagaccccatgagc
acaatcatcgacgaggatgttgactttgtcaggtcttactatgaaatgccggatgaagaa
attaacccagataaaatctccccttggctgcttcgcatagaattgaatcgtgaaatgatg
gtggataagaagctgagcatggctgatattgcagagaagatcaacgtcgaatttgatgat
gatttgacttgtatattcaacgatgataatgctgaaaaactgatccttcgaatccgtatc
atgaatgatgaagcaccaaaaggagacttaactgatgaagctgctgaggacgatgttttc
ttaaagaaaattgagagtaatatgctgacagaaatgtctcttcgtggtatcccagatatc
aacaaggtgtttatcaaacatggtaaagtaaacaagtttgacgagaatgatggatttaaa
ccagagaatgagtggatgcttgatacagaaggtgtcaatctgttggctgttatctgccat
gaagatgttgatgcaaagagaacgacaagcaatcacttgattgaagttattgaagttctt
ggtattgaggcagttcgtcggtcactcttggatgaattgcgtgttgtcatatcttttgat
gggtcttatgtgaattaccggcatttggctatcctttgtgatacgatgacctatcgtgga
cacttgatggccattactcgtcatggtatcaacaggaatgacactgggccaatgatgcga
tgctcttttgaagaaactgtggacattcttcttgacgctgcagtgtatgctgaaaccgac
tatttgaggggtgttacagagaatataatgttgggtcagcttgcgccaattggtacagga
ggttgtgccttgtatctcaatgatgagatgttgaaaaatgctattgaactccagctacct
agttatatggatggtcttgatttcggcatgacaccttcccgctctccagtctcgggaact
ccttatcatgaaggcatgatgtctccaggttatctgttgagcccaaatctccgtttgtct
cccatatccgatgctcaattctctccatatgttggaggaatggccttctctcctacttca
tcccctggttacagtccatcatctccgggctacagtccttcttcccctggatacagtcca
acctcgcctggttatagtcctacttcgcctggatatagtccaacaagtcctggttacagt
cccacctctccgacgtatagtcccagttctccgggctattctcctacaagtcctgcctat
tctcctacaagtccatcttattcacccacatcacccagctatagtcctacttctccgagt
tacagtccaacctctccaagctacagcccgacttcaccaagttacagtccaacttctcca
agctatagtccgacttcaccaagttatagtccgacttcgccagcttacagccccacatcc
cctgcgtatagccccacttccccagcatacagcccgacctcaccatcttacagccccaca
tcaccgtcctatagcccaacatcaccttcctacagcccgacatcgccctcctacagccca
acatctccatcctacagtcctacttcaccagcctatagccccacttctcctggctatagt
ccaacctcaccaagttacagcccaacctcacccagctatagcccaacatctccaagttac
aatcctcagtcggcaaaatacagcccctcactggcgtactctccaagcagcccgaggttg
tcaccatctagcccatatagtcctacatctccgaattacagcccaacatcaccatcatat
tcacccacatctccatcgtattctccttcaagccccacatacagtcccagcagtccattt
aactctggtgttagcccagactatagctcgagttctccacaatacagcccaagtgcaggg
tactcacccagccaacctggctactcgccatcatcgacgagccaatacactccacaaaca
agcgataaagatgacaaggatgatcggagcactcgttag
DBGET
integrated database retrieval system
