Mycobacterium noviomagense: MNVI_04590
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Entry
MNVI_04590 CDS
T06809
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mnv
Mycobacterium noviomagense
Pathway
mnv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNVI_04590 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnv03019
]
MNVI_04590 (deaD)
03009 Ribosome biogenesis [BR:
mnv03009
]
MNVI_04590 (deaD)
Enzymes [BR:
mnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNVI_04590 (deaD)
Messenger RNA biogenesis [BR:
mnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNVI_04590 (deaD)
Ribosome biogenesis [BR:
mnv03009
]
Prokaryotic type
rRNA helicases
MNVI_04590 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
BBY05141
UniProt:
A0A7I7P992
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All DBs
Position
complement(540238..542007)
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AA seq
589 aa
AA seq
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MAVPLTTVSLATATKLGLQMTSPDTAAETSPATFDDLQIHPSVLRAIVDVGYETPSAIQA
ATIPALMAGSDVVGLAQTGTGKTAAFALPILSKIDTTSNATQALVLAPTRELALQVSEAF
SRYAAHLPRLTVLPIYGGASYGVQLAGLKRGAHVVVGTPGRVIDHLDRGTLDLSRVDYLV
LDEADEMLAMGFADDVERILSDTPEYKQVALFSATMPPAIRKLTTKYLHDPLEVTVEAKT
TTAENISQRYIQVAGPRKMDALTRILEVEPFDAMIVFVRTKQATEEVAERLRARGFSAAA
INGDIPQAHRERTIAALREGGAGGIDILVATDVAARGLDVDRISHVLNYDIPHDTESYVH
RIGRTGRAGRSGTALLFVAPRERHLLKAIEKATRQKLVEAELPTVEDVNAQRVAKFADSI
TDALSSPGIELFRSLVEDYEREHDVPMADIAAALALQSRDGEDFLMSPEPPEPRRADRRT
EKPARKPRERTKDGFATYRIAVGKRHRVGPGAIVGAIANEGGLHRSDFGHITIGPDYSLV
ELPAQLPRATLKALERTRISGVLINLRPDRPSRDGRRRDSGKPRRKSAG
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtgccgctaacaaccgtgtcgctcgcaaccgccactaaactcggtcttcaaatg
acctcaccagataccgcggccgagacgtccccggccaccttcgacgacctgcagatccat
ccatcggttctgcgggcaattgtcgacgtcgggtatgagacaccatcggccatccaggcg
gccacgatcccggcgttgatggccggttccgacgttgtgggcctggcacagacaggcacc
ggcaaaacggcggccttcgctcttccgatcctgtccaagatcgacaccaccagcaatgcg
acgcaagcattggtgctggcgccgacgcgcgaactggctctgcaagtgtcggaggcgttc
agccgctacgccgcgcacttgccgcggcttaccgtgctgccgatctatggcggagcttct
tacggcgtgcagttggccggactgaaacgcggcgcccacgtcgtggtcggaacacccggg
cgggtcatcgatcacctcgaccgcgggacgctggatctgtcccgggtggactatctggtg
ctcgacgaagccgacgaaatgctggccatgggtttcgccgacgacgtcgaacgcatcctg
tcggacaccccggaatacaaacaggtcgcgttgttctcggcgaccatgccgccggcgatc
cgcaagctcactaccaagtacctgcatgacccgctcgaagtcactgtcgaagccaaaaca
acgacagcagagaatatttcgcagcgctacatccaagtagccggtccgcgaaagatggac
gcgctgacccgaatactcgaagttgagccgttcgacgcgatgatcgtcttcgtccgcacc
aagcaggccaccgaagaggtcgccgaaagattgcgtgcccgaggcttttccgcagcggcc
atcaacggcgatatcccacaggcccatcgggagcgcacgatagcggcgctgcgggaaggc
ggggcaggcggtatcgacatcctggttgccaccgacgtcgcggcccgcggtctggatgtg
gaccgaatctcgcatgtgctcaactacgacatcccgcacgacaccgagtcttacgtgcac
cgcatcggacgcaccggccgggccggacgttcgggaaccgcactgctgttcgtcgcaccg
cgtgagcgccacctgctcaaggcgatcgaaaaggcaacgcgccaaaagctcgtcgaggcc
gaactgcccaccgtcgaggacgtcaacgcgcaacgggtagccaaattcgccgactccatc
accgacgcgctcagctcaccgggcatcgagctgttccgcagcctggtcgaggactacgaa
cgcgaacacgacgttcccatggccgacatcgccgcggctctggcgttgcagtcccgcgac
ggcgaggacttcttgatgtcgccggaacctccggagccacgccgcgccgaccgccggacc
gagaagccggcgcgcaagccgcgagagcgcaccaaagacgggtttgccacttaccgtatc
gccgtgggcaagcggcaccgggtcggcccgggagcgatcgtcggcgctatcgcgaacgag
ggcggtttgcaccgcagcgatttcggccacatcacgatcggacccgactactccttggtg
gagctgccggcccagttgccgcgcgccacgctgaaggcgctcgaacggacccgcatctcc
ggtgtgctgatcaacctgcggccggaccggccctcacgcgatggccgccgccgcgacagc
ggtaagccgcggcggaaatcagccggatga
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