Entry |
|
Symbol |
deaD
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Name |
(GenBank) ATP-dependent RNA helicase DeaD
|
KO |
|
Organism |
mnv Mycobacterium noviomagense
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:mnv00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNVI_04590 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:mnv03019]
MNVI_04590 (deaD)
03009 Ribosome biogenesis [BR:mnv03009]
MNVI_04590 (deaD)
Enzymes [BR:mnv01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNVI_04590 (deaD)
Messenger RNA biogenesis [BR:mnv03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNVI_04590 (deaD)
Ribosome biogenesis [BR:mnv03009]
Prokaryotic type
rRNA helicases
MNVI_04590 (deaD)
|
SSDB |
|
Motif |
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Other DBs |
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LinkDB |
|
Position |
complement(540238..542007)
|
AA seq |
589 aa
MAVPLTTVSLATATKLGLQMTSPDTAAETSPATFDDLQIHPSVLRAIVDVGYETPSAIQA
ATIPALMAGSDVVGLAQTGTGKTAAFALPILSKIDTTSNATQALVLAPTRELALQVSEAF
SRYAAHLPRLTVLPIYGGASYGVQLAGLKRGAHVVVGTPGRVIDHLDRGTLDLSRVDYLV
LDEADEMLAMGFADDVERILSDTPEYKQVALFSATMPPAIRKLTTKYLHDPLEVTVEAKT
TTAENISQRYIQVAGPRKMDALTRILEVEPFDAMIVFVRTKQATEEVAERLRARGFSAAA
INGDIPQAHRERTIAALREGGAGGIDILVATDVAARGLDVDRISHVLNYDIPHDTESYVH
RIGRTGRAGRSGTALLFVAPRERHLLKAIEKATRQKLVEAELPTVEDVNAQRVAKFADSI
TDALSSPGIELFRSLVEDYEREHDVPMADIAAALALQSRDGEDFLMSPEPPEPRRADRRT
EKPARKPRERTKDGFATYRIAVGKRHRVGPGAIVGAIANEGGLHRSDFGHITIGPDYSLV
ELPAQLPRATLKALERTRISGVLINLRPDRPSRDGRRRDSGKPRRKSAG |
NT seq |
1770 nt +upstreamnt +downstreamnt
gtggccgtgccgctaacaaccgtgtcgctcgcaaccgccactaaactcggtcttcaaatg
acctcaccagataccgcggccgagacgtccccggccaccttcgacgacctgcagatccat
ccatcggttctgcgggcaattgtcgacgtcgggtatgagacaccatcggccatccaggcg
gccacgatcccggcgttgatggccggttccgacgttgtgggcctggcacagacaggcacc
ggcaaaacggcggccttcgctcttccgatcctgtccaagatcgacaccaccagcaatgcg
acgcaagcattggtgctggcgccgacgcgcgaactggctctgcaagtgtcggaggcgttc
agccgctacgccgcgcacttgccgcggcttaccgtgctgccgatctatggcggagcttct
tacggcgtgcagttggccggactgaaacgcggcgcccacgtcgtggtcggaacacccggg
cgggtcatcgatcacctcgaccgcgggacgctggatctgtcccgggtggactatctggtg
ctcgacgaagccgacgaaatgctggccatgggtttcgccgacgacgtcgaacgcatcctg
tcggacaccccggaatacaaacaggtcgcgttgttctcggcgaccatgccgccggcgatc
cgcaagctcactaccaagtacctgcatgacccgctcgaagtcactgtcgaagccaaaaca
acgacagcagagaatatttcgcagcgctacatccaagtagccggtccgcgaaagatggac
gcgctgacccgaatactcgaagttgagccgttcgacgcgatgatcgtcttcgtccgcacc
aagcaggccaccgaagaggtcgccgaaagattgcgtgcccgaggcttttccgcagcggcc
atcaacggcgatatcccacaggcccatcgggagcgcacgatagcggcgctgcgggaaggc
ggggcaggcggtatcgacatcctggttgccaccgacgtcgcggcccgcggtctggatgtg
gaccgaatctcgcatgtgctcaactacgacatcccgcacgacaccgagtcttacgtgcac
cgcatcggacgcaccggccgggccggacgttcgggaaccgcactgctgttcgtcgcaccg
cgtgagcgccacctgctcaaggcgatcgaaaaggcaacgcgccaaaagctcgtcgaggcc
gaactgcccaccgtcgaggacgtcaacgcgcaacgggtagccaaattcgccgactccatc
accgacgcgctcagctcaccgggcatcgagctgttccgcagcctggtcgaggactacgaa
cgcgaacacgacgttcccatggccgacatcgccgcggctctggcgttgcagtcccgcgac
ggcgaggacttcttgatgtcgccggaacctccggagccacgccgcgccgaccgccggacc
gagaagccggcgcgcaagccgcgagagcgcaccaaagacgggtttgccacttaccgtatc
gccgtgggcaagcggcaccgggtcggcccgggagcgatcgtcggcgctatcgcgaacgag
ggcggtttgcaccgcagcgatttcggccacatcacgatcggacccgactactccttggtg
gagctgccggcccagttgccgcgcgccacgctgaaggcgctcgaacggacccgcatctcc
ggtgtgctgatcaacctgcggccggaccggccctcacgcgatggccgccgccgcgacagc
ggtaagccgcggcggaaatcagccggatga |