Mycobacterium noviomagense: MNVI_24970
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Entry
MNVI_24970 CDS
T06809
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mnv
Mycobacterium noviomagense
Pathway
mnv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mnv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MNVI_24970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnv03021
]
MNVI_24970 (rpoC)
03400 DNA repair and recombination proteins [BR:
mnv03400
]
MNVI_24970 (rpoC)
Enzymes [BR:
mnv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MNVI_24970 (rpoC)
Transcription machinery [BR:
mnv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MNVI_24970 (rpoC)
DNA repair and recombination proteins [BR:
mnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MNVI_24970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBY07179
UniProt:
A0A7I7PF87
LinkDB
All DBs
Position
2675906..2679856
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITEVDDEMRHNELSTLEAEMATERKQIEDQRDAELEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLQEIWDTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAEAIQKLIETFDIEAEADSLREVIRSGKGQKKLRALKRLKVVA
AFQQSSNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ
PAGKDSPESGVYSSPAEAIMAMDRGALSVRAKIKVRLSQLRPPVEIEDELFGRNGWRAGD
AWTAETTLGRVLFNELLPQGYPFVNKQMHKKVQATIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPNKQAILDAYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPDDNPIITIVESGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREADCGTERGITVE
LAERQADGTLIRDPFIETSAYARTLGTDAVDTDGNVIVERGRDLGDPEIEALLAAGITSV
KVRSVLTCATGMGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDIVSGLPRVQELFEARVPRGKAPIADVTGRIRLEEGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLTKEVQQ
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggcctcgccaccgcggaggacatc
aggcaatggtcttacggtgaagtcaagaagccggagaccatcaactaccgcacgctgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggtgtc
gaggtgactcgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgcaccg
gtcacgcacatctggtacttcaagggcgtgccttcccggttgggctacctgcttgacctg
gcgccgaaggatctcgagaagatcatctacttcgcggcctacgtcatcaccgaggtcgac
gacgagatgcggcacaacgagctgtccacgctcgaggcggagatggccaccgagcgcaag
cagatcgaggaccagcgcgacgccgagctggaggcccgcgcccaaaagctcgaggccgac
ctcgccgagctggaggccgaaggcgcgaaagccgatgcgcgacggaaggttcgcgacggc
ggcgaacgggagatgcgccagattcgcgaccgtgcgcaacgtgagctggaccggctgcag
gagatctgggacaccttcaccaagctggcccccaagcagctgatcgtcgacgagaacctc
taccgcgagctggtcgaccgctacggcgagtacttcaccggcgccatgggcgccgaggcg
atccagaagctgatcgagaccttcgacatcgaggccgaggccgactcgctgcgtgaggtg
atccgaagcggcaagggccagaagaagcttcgtgcgctgaagcggctcaaggtagtggcg
gcgttccagcagtcgtccaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggaactgcgcccgatggtgcagctcgacggtggccggttcgccacgtcggacttg
aacgacctgtaccgccgggtcatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtcccgtcaccgggccgggcaaccgtccgctgaag
tcgttgagcgacttgctcaagggcaagcagggccggttccgccagaacctgctcggtaag
cgtgttgactactcgggccgttcggtgatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagctgatggcgttggagttgttcaagccgttcgtgatgaagcggttg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgt
ccgcaggtgtgggatgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcacccaccctgcaccggttgggtatccaggccttcgagccaatgctgatcgaaggcaag
gcaattcagctgcaccccttggtgtgtgaggcgttcaacgccgacttcgacggcgaccag
atggcggtgcacctgccgttgagcgccgaggcacaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccggccgctggccatgccgcgactggac
atggtgaccgggctgtactacctcaccaccgaagtgcccggcgacaccggcgaataccag
ccggctggcaaggattcgccggaaagcggcgtgtacagctcgccggccgaggcgatcatg
gcgatggaccgcggcgccctgagcgtgcgggccaagatcaaggtgcggttgagccagctg
cgcccgccagtcgaaatcgaggacgagctgttcggccgaaacggttggcgcgcaggcgat
gcctggacggcggagaccacgctgggccgagtgctgttcaatgagctgctgccgcagggc
tatccgttcgtcaacaagcagatgcacaagaaggtgcaggccaccatcatcaacgacctg
gccgagcgctacccgatgattgtggtcgcccagaccgtcgacaagctcaaggacgccggc
ttctactgggccacccgctccggtgtgacggtgtcgatggccgacgtgctggtgccgccg
aacaagcaagcgatcctcgacgcctacgaagagcgggccgacaaggtcgaaaagcagttc
cagcgcggtgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctccgcgagcactaccccgacgacaacccgatcatc
acgatcgtggagtccggtgcgaccggtaacttcacccagacccggacgctggccggaatg
aagggcctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcgtcgttc
cgtgagggcctgacggtgttggagtacttcatcaacacccacggcgcgcgaaagggcttg
gcggacaccgcgttgcgtaccgccgactcgggttacctgacccgccggctggtggacgta
tcgcaggacgtcatcgtccgcgaagccgactgcggcacggagcgcggcatcaccgtcgag
ctggccgagcgccaagccgacggcacgctgatccgcgacccgttcatcgagacctcggcg
tacgcccgcacgctgggcaccgacgcggtcgacacggacggcaacgtcatcgtcgaacgc
ggccgggacctgggcgacccagagatcgaggcgctgttggcggccgggatcacgtccgtg
aaggtgcgctcggtgctcacctgtgcgaccgggatgggtgtgtgtgcgacctgctacggg
cgctcgatggccaccggcaagctggtcgacatcggcgaggctgtgggaatcgttgcggcg
cagtccatcggtgagcccggcacgcagctgaccatgcgcacgttccaccagggtggtgtc
ggtgaggacatcgtcagcggtctgccacgggtgcaggagctgttcgaggcccgggtgccg
cgcggcaaggcgccgatcgccgacgtcaccggacgtatccggctcgaggagggcgagcgt
ttctacaagatcacgatcgtccccgacgacggtggcgaagaagtggtctacgacaagctc
tccaagcgtcagcggctgcgcgtgttcaagcacgaagacggcagcgagcgtgtgctcgcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctcaccaaggaggtccagcag
gtctaccgggcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccgccag
atgctgcgccgggtcaccatcatcgactcgggctcgacggagttcctgcccggctcgctg
atcgaccgcgcggagttcgaggccgagaaccggcgggtggtggccgaaggcggcgagccc
gccgccggtcgcccggtgctgatgggaatcaccaaggcgtcgctggccaccgactcgtgg
ctgtccgcggcgtcgttccaggagaccacccgggtgctgaccgacgcggcgatcaactgc
cgtagcgacaagctcaacggtctgaaggaaaacgtgatcatcggcaagctgatcccggcc
ggaaccgggatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcgtacgaggatcagtactacagcccggacttcggccaggcc
accggagccgcggtgccgctggacgactacggctacagcgactaccggtag
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