Macrobrachium nipponense (oriental river prawn): 135195559
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Entry
135195559 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135195559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135195559
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135195559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
135195559
NCBI-ProteinID:
XP_064077907
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Position
16:7572193..7594831
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AA seq
926 aa
AA seq
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MANLQPKEFAVEGAGEQGFLSFLRSLPEKSNTTVRIFDRGEYFTVHGPDAVLAARELFHT
NSVIKLLGAGDNKVESVILSRLNFESFVRDLLLVKHYRIEVYKQKSGKNDWEAEYKASPG
NLSQFEEILFGGSSELHVTTGVMAVKLANESGQRIVGVGYVDTAGRVMTVSEFTDNEAFS
NLEALIVQLGPKECLIAQGDLGPGGVKLKQVLSRSNMLVTERKKGEFSVKDADQDLNRLL
RGKDTGSVATRPEFDRVVALAALTVVIKYLELLSDESNFGQFGLSQYDLSQYVRIDSAAV
RALHVEPMGETLEVSGGSSKTHTILGLLDKCRTPLGHRLLAQWLRQPLIDINKIEERQDL
VEALVSSVDLRHSLGEEHLRSIPDLHRLARKLTRKAATLQDCYRFYVCVQRLPSMCEAIA
KYEGPHVTSLAAVFTTPLQELISDLSKFQEMIETTVDLEQAKLGEYVIKPDFDDKLGVLR
ENMDDLEKDIQSQFRKAASDLGLEAGKSIKLESNAQLGYFFRVTLKEEKVLRNNRSYRMI
DTNKAGVRFRNSALEDLNNQHTSCREEYGSHQKVVVNEILGIAAGYVEVIQQFGQIIATL
DCVFALATAAVSAPIPYVRPKLLPKGSGVMKXEGIRHPCLELQDEISYIPNDCTLNEDGG
LFHIITGPNMGGKSTYLRSVGAAALMAQIGSFVACDEAEISVLDSILARVGAGDCQLKGV
STFMAEMLETATILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAKEIGAFCLFAT
HFHELTSLADEVNSVKNFHVTASTSHGSLTLLYQVRPGACDRSFGIHVAKLANFPDSVIE
YAKRKAGELEDEFCGEDDDESEEAVKRRKVEKREGEKLIETFLSKASALHKEGVDDEKLQ
QEIGKLRQEVLSTNNTYISHLLSRET
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttgcagccgaaggagttcgccgtggaaggagccggcgaacagggtttcctc
tcatttttgcgaagcctccctgaaaaatcaaatacgacagtgagaatatttgatcgcgga
gagtacttcacagtacatggacctgatgctgttttagctgccagggaactgttccacact
aattctgtcatcaaacttttgggagcaggtgataacaaagttgagtctgtcatcctgagt
cgattgaattttgagtcctttgttcgtgatctgcttcttgttaaacactaccgaattgag
gtctataagcaaaagtctggcaagaatgattgggaggctgaatacaaggcttcacctggc
aatttatcccagtttgaagaaatcttgtttgggggaagcagtgagctacatgttacaaca
ggtgtcatggctgtaaaattggctaatgaaagtggacagaggattgtcggagttggttac
gtggacacagcgggaagggtcatgactgtctcagaattcactgacaatgaagctttcagt
aatttagaggctctgattgttcagcttggacctaaagaatgcttaattgcacagggtgat
ttgggcccaggtggagtgaagctgaaacaggtactttcaagaagcaatatgctcgtcact
gagagaaaaaagggtgaattttcagtgaaagacgcagaccaagatctgaatcgtctcttg
cggggaaaagacaccggctctgttgcaacaagaccagaatttgatcgtgttgttgctctt
gcagccttaactgtagtgatcaaatacctggagcttcttagcgatgaatcgaactttggc
cagtttggcctctcccaatatgacttgagtcagtatgtgagaatagatagcgctgcagtc
agagcacttcacgttgagccaatgggagaaacgcttgaggtgtctggtggatcttccaaa
acacataccattcttggccttttggacaaatgtcgaacaccgttgggtcatcgtcttctt
gctcagtggcttcggcagcctctcattgacattaacaaaatagaggagcgccaggaccta
gttgaagctctggtatcgtcagttgacttacgtcacagccttggagaagaacaccttaga
agtattcctgatcttcataggttggcacgaaaattgactcgtaaggcagcaacactacag
gattgctataggttttatgtttgtgttcagcgtttacccagcatgtgtgaagctattgca
aaatatgaaggtccccatgtaacgtctttagcagcagtgtttacgacccctcttcaggaa
ctaatatccgacctcagtaagttccaagagatgattgaaacgactgttgatttggaacaa
gccaagttgggagaatatgttatcaagccagattttgacgacaaacttggagtgctgcgg
gagaacatggacgatttggaaaaggatattcagagtcagtttagaaaggctgctagtgac
ttgggcctggaagcaggaaaatccataaaactggagtcaaatgcacaacttggatatttc
ttcagagtcactttaaaggaagaaaaagtcttgcgtaataataggagctatcgaatgata
gatacaaacaaagctggtgtgaggttcagaaacagcgccttggaagatttgaataaccaa
cacacctcttgtcgagaagaatacggatcacatcagaaagttgtagttaatgagatatta
ggcattgctgccggatatgttgaagttattcagcagtttggacaaattattgcaaccctc
gattgtgttttcgccttggctacagcagctgtatcagcacccattccttatgtgcgacct
aagcttttacccaaaggctctggtgtgatgaagnttgaagggattcgacatccttgttta
gaacttcaggatgagatttcttacattccaaatgattgtaccttaaacgaagatggtgga
ctctttcacataattaccgggccaaacatgggtggtaaaagcacatacctcagatcggtt
ggagcagcagcactgatggctcagattgggtcttttgtggcttgtgatgaagctgagatt
tctgtgttggacagtatactggcaagagttggtgctggtgactgtcagttgaagggagtt
tcaacgtttatggcagagatgttagaaacagcaactatcctacgatctgcgactaaagac
tccctgatcatcattgatgagttagggcgaggaacgtcaacttacgatggctttggttta
gcttgggcaatatcagagtacatagctaaagaaataggagccttttgtctatttgctact
cattttcatgaacttaccagtttagcagatgaagttaattctgtgaagaactttcatgtg
acagcatctacctctcatggttcccttactttattatatcaggttcgtccaggagcctgc
gatcgaagctttggtatacacgtagccaagctagccaactttcctgatagtgtgattgag
tatgcaaagagaaaagccggcgaactggaagacgaattctgtggtgaggatgatgatgaa
tcagaagaagctgtgaaaagaaggaaggtagagaaacgtgagggagaaaaattgatagaa
accttcctctccaaagcctcagccttgcacaaggaaggggttgacgatgaaaagttacag
caggaaatcggcaagttgaggcaagaagtgctttctacgaataacacctatatatctcat
ttattgtctcgtgagacctga
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