Macrobrachium nipponense (oriental river prawn): 135196298
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Entry
135196298 CDS
T09903
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03030
DNA replication
mnz03410
Base excision repair
mnz03420
Nucleotide excision repair
mnz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135196298
03410 Base excision repair
135196298
03420 Nucleotide excision repair
135196298
03430 Mismatch repair
135196298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mnz03032
]
135196298
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135196298
DNA replication proteins [BR:
mnz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135196298
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135196298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
AAA_16
RuvB_N
AAA_14
AAA_33
AAA_18
AAA_30
AAA_19
Motif
Other DBs
NCBI-GeneID:
135196298
NCBI-ProteinID:
XP_064079076
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All DBs
Position
17:complement(69243669..69353921)
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AA seq
1186 aa
AA seq
DB search
MDIRKYFSPVGGSKPNTTASSKETKKKNRIIDSDDEDPLPSSSKKQKILASDSDDDIFSS
SKNKKSKAGAKTKKKSLPKPEPPKLKPAAVSEFFGSNPVVRKEAPVVTAKKKEVEMVEVH
SDDDFEKTLQELDEKKNKEKSSSQHEKKDDFAKTLQELDEKKNKEKSSSQHEKKDDFAKT
LQELDEKRNKEKYSSQHEKKEKSKDITPKKTKHESKSESHNEEKPKPNENSPPDENAKKS
SLSSKLSAKINSFEKKDKLEVEKKERTREVTPHKEKKRDHRKEGSSSHEKKRKHSDDGRN
NRRDRTPDKNDNIHKKQKLSTQKDEGFAKQEEKGAPKRERYESGEKEKCVEQRDVTPSKQ
KNEKEKSSSMKEKPKGITPKKEEIASDIETTPQPDEKKKIARAAYFKFLQRSGPSNPGSK
PIPEGKPECLQGLVFVLTGVLESLDREEASELIKKYGGKVTSSLSRNTTYVIVGNEAGES
KLKKAEQLGTKQITEDDLLDLIRTRPGKGSNETPKGNEKKSTASKLKAFERSNKASIPTK
NSGSDEAASDLPPVNFSSSKSTKSSPQKSFTLSQSSQDSQKIMNGNSQSSSTSSPKTQPV
SSQELKDRSGETLMWVDKYKPVNVKNIIGQQGDKSNVKKLSVWLQNWKKNQFGGKKLVRP
SPWAKDDNGAFFKCALLSGPPGVGKTTTAHLVCKEAGFDFVELNASDARSKRRLDEVVAE
LLSNKNLAGYAGGKEKGSTSENHALVMDEVDGMSGNEDRGGVQELISLIKKSKVPIIAMC
NDRNHPKIRSLANYCFDLRFNKPRIEQIRGPMMSVCFREGVKIKPDALDQIIMGANQDVR
QILHHLSVWSANRETLAADAMKVEAEKAKKDLKLGPWDVCKKVFTESDHKNMSIYDKSDL
FFHDYSIAPLFVQENYPKCVPHSAQSNRRKTLEQLSKTAASIADGDLCEKAIRSRNAWSL
LPVQAMYSSVLPGDYMSGHLSSQIEFPKWLGNNSRRNKFDRLMQELQMHMRLRISGSKMD
VNMDYCESLKNAVTQPLVKEGVDGIHSAMDVMNTYNLLREDLDSMLELTQWPGSKDPMSN
VDSKVKAAFTRTYNKEGHMTPFAHVTVTKKKKGSSGGMGEEGMYGEDEEESEEEEEDITK
SAMIMVKKGGGKKGEPSSSKGEGRGGSSNRGAGRGRGRGGRGRGKK
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggatataagaaaatatttttctcccgttgggggaagtaaaccaaatacaactgcgtct
tcaaaagaaacaaagaaaaagaatcgtattatagattcagatgatgaagaccctcttcct
tcctcaagcaaaaaacagaaaattttagcatcagactcagatgatgatattttcagttcc
tctaagaacaagaaaagtaaagcaggagcaaaaacaaagaaaaagtctcttcccaaacca
gaacctcctaagctgaagccagcagctgtgtcagaattttttggtagtaacccagttgta
cgaaaagaagctcctgttgttactgcaaagaagaaggaggtggaaatggttgaagttcat
agcgatgatgactttgagaagacacttcaagaattagatgaaaagaagaacaaagagaaa
tcttcatctcaacatgaaaaaaaggatgactttgcaaagacacttcaagaattagatgaa
aagaagaacaaagagaaatcttcatctcaacatgaaaaaaaggatgactttgcgaagaca
cttcaagaattagacgaaaagaggaacaaagagaaatattcatctcaacatgaaaaaaag
gaaaaatccaaggacatcacaccaaagaaaaccaagcatgaatccaaatcagagtcacac
aatgaggagaagcctaaaccaaatgaaaatagcccacctgatgaaaatgctaagaaaagt
agtctttctagtaagctgtctgcaaagataaacagctttgaaaagaaagataagctggaa
gtagagaagaaagagagaacccgagaagttactccccacaaggaaaagaagcgtgaccac
agaaaagaaggaagcagcagccatgaaaagaaaagaaaacatagtgatgatggcaggaat
aatagaagagacagaacaccagataagaatgataatattcataagaaacaaaaattatca
actcaaaaagatgagggattcgcgaaacaggaagagaaaggagcgccaaaaagggaacgc
tatgaatctggtgagaaggaaaagtgtgttgaacaaagggatgtcactccttcaaaacag
aagaatgaaaaagaaaaatcatcaagcatgaaggaaaaacccaaaggtataactcctaaa
aaggaagaaattgcatcagatattgaaactacaccccaaccagatgagaagaagaaaatt
gccagagcagcatatttcaaatttttgcagagatctggcccaagtaatccaggcagcaag
cctattccagagggaaaaccagagtgtttgcagggccttgtgtttgtgttgacaggtgtt
ttagaaagtttagatcgggaggaagcatcagagctcattaagaaatatgggggtaaagtc
acctcatccttgagccgcaatacaacctatgtaattgtaggtaatgaagctggggaaagt
aaattaaaaaaggcagaacagttgggcacaaaacagataactgaggatgatttgttagac
ttaatacgaactcgaccaggaaagggcagtaatgaaactcctaaaggaaatgagaaaaaa
tcaactgcaagtaaacttaaagcatttgaaagaagtaacaaagcaagtattcctacaaag
aattcgggttctgatgaagcagctagtgatttaccacctgtgaatttctccagttcaaag
agtacaaaatctagtcctcaaaaatcttttacattgtctcagagtagtcaagattcgcaa
aaaattatgaacggtaacagccagtcgtcatcaacgtcttcaccaaaaacacaaccagtg
tcatcccaagaactcaaagatcgctctggggaaacactcatgtgggtagataaatacaag
ccagttaacgttaagaatatcatcggccagcagggtgacaagtcaaatgttaaaaaactg
tcagtgtggttgcaaaactggaagaaaaaccaatttggtggcaaaaagctagtgagacca
agtccttgggccaaagatgataacggagccttctttaaatgtgctttgctgtcgggacca
cctggtgttggtaaaaccacaacagctcatctagtgtgtaaagaagctgggtttgacttt
gttgagctcaatgcttctgatgctcgatcaaaacggcgactagatgaggtggtagcagag
ttactttcaaacaaaaatcttgctggatacgctggaggtaaggagaaagggagtaccagt
gaaaatcatgctctggttatggatgaagttgatggaatgtcgggtaatgaagatcgagga
ggagttcaagagttgatttcgttgattaagaaatctaaagttcctattattgccatgtgt
aatgacagaaatcatccaaaaatcaggtctcttgctaactactgttttgacctgagattc
aataaaccaagaatagaacaaattagaggcccgatgatgtccgtgtgcttccgtgaaggt
gtcaaaattaagcctgatgcccttgatcagattataatgggagcaaatcaagatgtacgt
cagattcttcatcatttgtcagtgtggtcagcaaatcgggaaacattagctgcagatgcc
atgaaggtggaagcagaaaaggctaaaaaagacctaaagttgggtccctgggatgtttgc
aagaaagtcttcacagaaagtgaccataagaatatgagcatatatgacaaatcagatttg
ttcttccatgactattccattgcacccctctttgtgcaagaaaattatcctaagtgtgtt
cctcacagtgctcagagcaatcgccgaaagaccctggagcaattgtcaaaaactgcggct
agtatagcagatggagatctctgtgaaaaggccatcagatccagaaatgcatggtcactc
cttcccgttcaggcaatgtatagcagtgttcttccaggagattatatgtcagggcattta
tcttcacaaattgagttccccaagtggcttggtaataatagccgtcgtaataaatttgat
cgtcttatgcaagagttgcaaatgcatatgagactgagaatttcaggaagtaaaatggat
gttaacatggattactgtgagtcgctaaaaaatgctgtcactcagcctttggtgaaggaa
ggagtggatggtattcacagtgcaatggatgttatgaatacttacaaccttttaagggaa
gatttggattccatgttagagttaacacagtggcctggctcaaaagatccaatgagtaat
gttgatagtaaggtaaaagcagctttcacacgaacctataataaagaaggccatatgact
ccatttgctcatgttactgttacaaagaaaaagaaaggtagttctggtggtatgggtgag
gaaggaatgtatggtgaagatgaggaagaaagtgaggaagaggaagaggacatcaccaaa
agtgcaatgattatggtgaagaaaggtggaggaaagaaaggagagcctagcagcagtaaa
ggtgaaggtcgtggtggaagtagtaacagaggtgctggcaggggcaggggcaggggcgga
agagggagaggcaaaaagtga
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