Macrobrachium nipponense (oriental river prawn): 135197088
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Entry
135197088 CDS
T09903
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135197088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135197088
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135197088
mRNA degradation factors
3'-5' decay
Pan complex
135197088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
IFR3_antag
Motif
Other DBs
NCBI-GeneID:
135197088
NCBI-ProteinID:
XP_064080115
LinkDB
All DBs
Position
18:55888675..56220044
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AA seq
701 aa
AA seq
DB search
MDPMLLNLGIAQQATTAAAAVASSTPPGTGQVNGLPQESKLATYISNRQQLTNSQQNTSL
TKCVAALSLDGVGSRKVSVSSVGNITEFVPGASGNSGLAHSSSTPSFHTLSGIGSPSLAT
SASLGFTSMTRSSPGGIVASPQRAASPQGSPTRGRRSPQVSATGEEASSASSVPTYHENV
GGTTYFFTAQDQNFAAGAAAPSPAPFSAPQPALVFPPFHVLPPTPAHVHHLRSSNNPPHF
FMSDDLRHEILERHALTMAHIDPEQFPDIPQEVDMYHELVPLEPQHGLNKSSIFGYATSV
YKATNVKTGLHYCLFRIHSYRLNNVKVTQLVDLWKKLQHSSVVQLREVFTTKAFNDNSIV
FVYDYHAGAETLAARHFSAAALSANGWEGLTNPPAVAAGSGAIDTPQRNLHKNIQHNSGN
TLIPETILWTYIIQLTGALRAIHTQGLACRTLDPSKIILTDGKTRIRVNCCGIIDVLNFD
PNVANPLANMPQYQQEDLVSLGRLMLALACNSILAVQRDNIQSALELVNRSYSRDLSMLV
VCLLTAQRIKSINDVMPMIGARFYNALEAITQKADVYEAEIYKEVHNGRLFRLITKLNTI
ADRPELNLDTSWSETGDRYMLKLFRDYVFHQVTDDGRPWLDLGHVVSVLNKLDAGSPDKI
CLMSHDEQNILVTSYSELKRCFERSFNELLQAASSHKTSLS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaccccatgcttctcaacttgggtatcgcccagcaagcaaccactgcagcagcagca
gtagcatcctcaacgccacctggaactggccaagtgaatggacttcctcaggaatcaaag
cttgctacttacataagtaaccggcagcaattaaccaactctcagcaaaatacgtctctc
accaagtgtgttgctgctttgagtttagatggcgttggctcaaggaaagttagtgtgtca
tctgttgggaatatcacagagtttgtgccaggtgcaagtggaaattctggccttgcccat
tcatcctcaactccatccttccatactttatctggcataggatctcctagccttgctaca
tcagcttcactgggttttacatccatgacaaggtcatctccaggaggcattgtagcatct
cctcagagagcagcatccccccaaggttctcccaccagaggcagacggtcacctcaagtc
agtgctacgggtgaagaggcaagtagtgcttccagtgtgcctacctaccacgaaaatgtt
ggaggaacgacttatttcttcactgcccaagaccaaaactttgcagctggagctgcagca
ccttctccagcacctttttcagcaccacagcctgcattggtgtttccaccatttcatgta
ctgccgcccacgcctgcccatgtccatcatcttaggtcttctaataatccacctcatttt
tttatgagtgatgacctgagacatgaaatattagaaagacatgccctgacaatggcacat
atagatcctgaacaatttccagatattccacaggaggttgacatgtaccatgaattagtt
cctttagagcctcagcatggcttgaataagtcttcaatatttgggtatgctacctcagta
tataaggccaccaatgtcaaaacaggacttcattactgtctcttccgtatccatagctat
cgactgaacaatgtgaaagtgacgcagttggtggatttgtggaagaaattacaacattcc
agtgtagtccaattacgagaagtgtttaccaccaaagcattcaatgacaattctattgtt
ttcgtttatgattaccatgctggtgcagaaaccttagctgcgcgtcacttttctgcagca
gccttgtctgccaatggctgggaaggcttgactaatcctccagctgtagctgctggctct
ggagccattgatacgccacaacgcaaccttcataaaaatatacagcataattctggcaat
actttgatacctgagaccatattgtggacatatattatccagctaactggtgctcttcgc
gccatccatactcagggattagcatgtcgcacattagatccatcaaagataattttaact
gatggaaaaacaagaattagagtaaattgttgtggcataattgatgtgttaaactttgat
cctaatgtagcaaatcctctcgccaacatgccacagtaccagcaagaggatttggtaagc
ctgggaaggttgatgcttgctttagcttgtaactcaattttggcagtacaaagagataat
atacagtctgctctggaacttgtcaatagatcatactccagggatttgtcaatgctggtg
gtgtgtcttcttactgcacaacgtatcaagagcataaatgatgtaatgccaatgattgga
gccagattttacaatgctttagaggcaatcacgcagaaggcagatgtgtatgaagctgag
atttacaaagaagtacacaatggcaggcttttccgtttgataacgaagttgaatacaatt
gcagatcgacctgagttgaatttggatacttcttggagtgaaacgggggatcgctacatg
ctgaaactcttccgtgattatgtctttcatcaggtaacagatgatggtagaccttggttg
gacttaggccacgttgtgtctgtattaaataagttggatgccggctcccctgataagatt
tgtctcatgtctcatgatgagcagaacatcctggtaacatcctattcagagctgaagagg
tgttttgagaggtcttttaatgaactcttgcaggctgcatcatcacataaaactagttta
tcttag
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