Macrobrachium nipponense (oriental river prawn): 135198819
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Entry
135198819 CDS
T09903
Name
(RefSeq) transcription factor Sox-2-like isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mnz03000
]
135198819
Transcription factors [BR:
mnz03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
135198819
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Vir1p
Motif
Other DBs
NCBI-GeneID:
135198819
NCBI-ProteinID:
XP_064082856
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Position
22:79664097..79709912
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AA seq
455 aa
AA seq
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MLTLDPPDLKGGSLHSPHLPPHSSHSHSVPHTVSHAHHNSHSHTYSLSHPSSLTSLNSSL
TSSLSTPSLASVGSMSAHSPPQTHVPTPTNNNNSSTNNNNNGSTNNSSSNSSSNNKSNAS
ASSSAAERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID
EAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLASGLLPSDPTRPPVQQVTRDMYNMT
NGYMPNGDYGDYGEWRYGYDGYGASQGYPYMTSQVYSGYDMTRGYSPTSSSTPSYMNGSY
SSAAMYASAPSPYSMSQILRLKSATPPPLQMASMASGVGSVGSVGSSASHSPTPIKSETP
TLPVSSPGATMPPSASHTTASDYQSAVMKREYGSGQPGQQDLSQMISMYLPGSQERHEQQ
KAAAAAAYMSHAHYHAHAAASPEQMPPAPMPLAHM
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccctcgacccgccagacctcaaagggggcagtttgcattccccacacttgccc
cctcattcctcccattcccattcagttccccacaccgtctcccatgcccatcacaattcc
cattcccacacgtattccctgtctcacccttcctccttgacttcgctcaattcctcgctc
acctcctcactctcgaccccttccctggcgtccgtcgggagcatgagcgcccattcgcct
ccccaaacacacgtgccgacgcccaccaacaacaacaatagctccaccaataacaacaac
aacggctccaccaacaacagctcgagtaatagcagcagcaacaacaaaagtaacgcctcg
gcctccagttccgccgccgagagagtgaaacgccccatgaatgcctttatggtttggtct
cgaggccagagacgcaaaatggcccaggaaaaccccaagatgcacaactcggagatctcg
aagcgtctcggggccgagtggaagctgctctcggagaccgagaagagaccattcatcgac
gaggccaagagactgcgagcagtgcacatgaaggagcatccagactacaagtacagacct
cggcggaagaccaagactctcatgaagaaggacaagtaccccttggcatccggtctcctc
ccatccgaccccacgcgacctcccgtacagcaagtgacccgagatatgtacaatatgacc
aatggctacatgcccaatggcgactacggcgattacggtgagtggcgatacgggtatgac
ggctacggtgcaagccaaggctatccatacatgacaagccaagtctacagcggttacgac
atgaccaggggctactctccgacttcctccagcacgccttcctacatgaatggctcgtac
agttctgcggccatgtatgcatcggctccttctccttattccatgagccaaattcttcga
ctcaagagtgctacccctcctcccttgcagatggcgtccatggcgtcaggagttggttct
gtgggctccgtcggatcttctgcgtctcattcaccgacgcccatcaaatctgagacgccc
actctcccagtgtcatcccctggggccaccatgcctccttctgcaagccataccacggca
agcgactatcaaagtgccgtgatgaaacgcgagtacggttcgggtcagcctggacagcag
gacctctcccagatgatctccatgtacctgccgggctcccaggaacgccacgaacagcag
aaggcagcagctgccgccgcatatatgtcccacgcccattatcacgcccacgccgccgcc
tcacctgagcagatgccgcccgcgccaatgccactcgcccatatgtaa
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