Macrobrachium nipponense (oriental river prawn): 135200019
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Entry
135200019 CDS
T09903
Name
(RefSeq) exosome complex exonuclease RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135200019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135200019
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
135200019
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
135200019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
135200019
NCBI-ProteinID:
XP_064084304
LinkDB
All DBs
Position
26:complement(18676722..18686986)
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AA seq
280 aa
AA seq
DB search
MTDLNLSDAEKRYIVDGVKLGIRVDGRERLDYRQLELETGIVSTANGSARVRLDRTDVLV
TVKMEMEPPAPDRPKNGHLYFFVNCSANAAPEFEGRGGEDLATSLSSMLERVYSSPHTLD
TRKLCVVEGKYVKALYVDIEILECGGNLFDTVSVGVKAALWATELPRIHVVGEDGGELEF
ALSDNPHDVDRVDVSNAPVLITHLRITENLTVIDPTPEEECCGPVSVVVGVTPKGHITAT
QLLGSGTFTPKTLSSSIKSARDLGQRIHQHLQMKLHQKKT
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgacagatctaaacttaagcgatgctgagaaaagatatatagtggatggtgtcaagctt
ggaattcgtgttgatggcagagagcggcttgattatagacagctggaattggagacaggc
attgtatctacagcaaatggttctgccagagttagactcgatcgcactgatgtattggtt
acagttaaaatggaaatggaaccaccagctcctgaccgaccaaagaatgggcatctctac
ttttttgtaaattgttctgctaatgctgcaccagagtttgagggacgtggtggtgaggat
ctagcgacaagtcttagttcaatgctagaaagagtttattcctccccacacacattagac
acaaggaaactatgtgtggttgaaggcaaatatgtaaaagcactttatgttgatatagag
atcctagagtgtggtgggaatttatttgatacggttagcgtaggtgtcaaagctgctctt
tgggcaacagagttacctagaatacatgtggtaggtgaagatggaggtgaactagaattt
gctctgtcagataatccccatgatgtagacagggttgatgtctccaatgctccagtcctt
atcacacatttgaggataacagaaaatttaactgtcatagaccctactccagaggaagaa
tgttgtggtccagtatctgttgttgtaggtgtaaccccaaaaggacacataactgctaca
cagttgttagggagtggtacatttactccaaaaactttgtcatcttctataaagagtgca
agagaccttggacagaggatccatcagcatcttcagatgaaattgcaccagaagaaaaca
tag
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