Macrobrachium nipponense (oriental river prawn): 135200090
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Entry
135200090 CDS
T09903
Name
(RefSeq) general transcription factor IIH subunit 1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03022
Basal transcription factors
mnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135200090
09124 Replication and repair
03420 Nucleotide excision repair
135200090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnz03021
]
135200090
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135200090
Transcription machinery [BR:
mnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135200090
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135200090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
POB3_N
Motif
Other DBs
NCBI-GeneID:
135200090
NCBI-ProteinID:
XP_064084473
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Position
26:26969460..27020652
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AA seq
580 aa
AA seq
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METPVVSFFPARCLYLSDTCFGLDTPVLRQTSKAKMSGEREDILLQVNHVRYKKNNGQLY
LSQSRVGWMMDDSDTFTVSVQYSDIRTQKISPEGKPKVQLQIVLHDMTTHTFHFCTPEGR
DKQVIERNQTKERLAQLMDKRKRLPPDDLVQKKRMLDENEQLCQLYKDLVATDIISGDEF
WKEIAVQYKNNMGPNQDVGISGAFLADIKPQTDGSNGKVQYNITPEIMLAVFKTYPAVKK
KHSEYVPHRMSEAEFWTRFFQSHYYSVHTNSSSENVFSECAKYDDKEWNRDVESAKTDPL
YDLNDIYEEKPMSIDSDIRIAGAKAGSNIMHATMIKRFNQQSVGIIKAHAYTEREKLLDE
LAAQNPDSLPNGDADPEVEVQKSKKVRLEEKVTYDDLQGPSKVESASLTINQTHRYLIGP
TEYASVQRLEPRQVSILQQQMVATVCNWKPDLPNSQDPDAAYMNLQQFSEMCRRGRTSGG
IRSGDELPGKLHKELTLVYSSAGELLRHFWSCFPPRTPQLQEKLHRMHQTLCRYHEKTIR
PFRDMAVNDYNCNATILDHLLGMINIANTKYENWKARNSR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcccgttgtttctttcttccccgctagatgtctctacttgtccgacacatgt
tttggtctagacaccccagtgttacgccagacgtcaaaggcaaagatgagtggagagaga
gaagacatccttcttcaggtgaatcatgtccgctacaagaaaaataatggacagctttac
ctttctcagtccagagtcggctggatgatggatgactcggacacatttacggttagcgtt
cagtatagtgatatccgaacacaaaaaatctcacctgagggtaagccaaaggtccagttg
cagattgtactgcatgatatgactacccatacattccatttttgtacgccagaaggaagg
gataaacaggtcattgaaaggaatcaaacaaaggaacgcctggcccagttaatggacaaa
agaaaacgcttgcctcctgatgatttggtacaaaagaaacgaatgctagatgaaaatgaa
caactctgtcaattatataaggacttggtagccactgatattatctcaggagatgagttt
tggaaggagatagctgtccagtacaaaaataacatgggcccaaatcaagatgttggaata
tcaggagcttttcttgctgatattaaaccgcagactgacgggagcaacggaaaagtacaa
tataacattacaccagagattatgcttgctgtattcaagacgtaccctgcagtgaagaaa
aagcactctgaatatgtaccacacagaatgagtgaagcagagttctggacgcgtttcttt
cagtcacattattacagtgttcatacaaacagtagtagtgaaaatgtgttttcagaatgt
gcaaaatatgatgacaaagagtggaacagagatgtagagtcagctaaaactgaccccttg
tatgacttaaatgatatttatgaagagaagccaatgtcgatagacagtgatatcaggatt
gctggtgccaaggcaggaagtaatattatgcatgccactatgattaaaaggtttaaccaa
cagagtgtcggtattattaaagcacacgcatacacagaaagagagaaactgttagatgaa
ttagctgcccagaacccagacagtcttcctaatggtgatgcagatcctgaggtagaagta
cagaaaagtaaaaaggttcgtttagaagaaaaagtaacatatgatgaccttcagggtcct
tccaaagttgaaagtgcctcactaaccataaaccagacacatcggtacttaatagggcct
acagaatacgccagcgtacagagacttgaacctcgtcaggtaagcattttgcaacaacaa
atggtggccactgtgtgcaactggaaaccagatttgccaaattcacaagatccagatgct
gcttatatgaatcttcagcaatttagtgagatgtgtcggagaggtagaacaagtggaggc
attcggtcaggtgatgaactgcctggaaaattacacaaagaacttacattagtttacagt
agtgcaggagaactgttaaggcatttttggtcttgttttcctccaagaacaccacaatta
caggaaaaactacacagaatgcatcagaccctctgtcgttaccatgaaaaaacaattaga
ccatttcgggacatggctgtgaatgattacaactgcaatgcaaccatcttggaccatctg
ttaggaatgatcaacatagcaaacacaaagtatgaaaattggaaggcgcgaaattctagg
tga
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