Macrobrachium nipponense (oriental river prawn): 135200235
Help
Entry
135200235 CDS
T09903
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03020
RNA polymerase
mnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135200235
09124 Replication and repair
03420 Nucleotide excision repair
135200235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnz03021
]
135200235
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135200235
Enzymes [BR:
mnz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135200235
Transcription machinery [BR:
mnz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135200235
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135200235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
135200235
NCBI-ProteinID:
XP_064084745
LinkDB
All DBs
Position
26:43562273..43650137
Genome browser
AA seq
1916 aa
AA seq
DB search
MSLDNSKATLRPVRRIQFGILSPDEIRRMSATEGGIKYAEVYENGRPKLGGLMDPRQGCI
DRNTRCITCAGNMTDCPGHFGHMELAKPVFHIGFVTKTIKILRCVCFYCSKLLFNAQNPK
IREIVTKSKGQPRKRLLHVYNLCKSKMICEGGDDVDVGKDPEDPSVLKKGSGHGGCGRYQ
PKIKRVGLELIAEWKHVNEDTQEKKQVLTAERVYEIFKHITDEECYLLGMDPKYARPDWM
ILTVLPVPPLPVRPAVVMHGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHIIVENIK
MLQFHVATLTDNDMPGMPRALQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
ADPNLRIDQVGVPRSIAQNLTYPEIVTPFNITKMQELVKRGNNQYPGAKYIVRDNGARID
LRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSV
TSPYNADFDGDEMNLHVPQSMETRAEIENLHVTPRMIITPQANKPVMGIVQDTLTAVRKL
TKRDVFLEKAEMMNLLMFLPIWEGRMPQPAVLKPKPLWTGKQLFSLIIPGNLNLVKTHST
HPDDEDDGPYKWISPGDTKVLVEHGELVTGILCKKTLGASSGSMLHVAWMELGHEIAGRF
YGNIQTVVNNWLLLEGMSIGIGDTISDPATYRVIQDTIRKAKEDVIEVIHKAHNDELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEYVEFQKMPT
VKLSNRRFEDRYRFDVTNERYLRRLFNEDVVRELIGSPEAISTLEGEWQQLQEDRVGLRE
VFPKGDTKVVLPCNLERMIWNVQKIFHINKRTPTDLSPVKVVEGVRDMLVKCNIVTGEDR
ISVQANRNATFCFQCLVRSTLCTKKVAEEYKLTTESFNWLIGEIETRFHQAIAAPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLVGASA
RDAEKAKNVLCRLEHTTLRKVTSNTAIYYDPDPQNTCITEDQEFVNVYYEMPDFDVSRIS
PWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAEKLVLRIRIIVGDDKL
ADDAEEQVDKMEDDTFLRCIEANMLNDLTLQGIEAITKVYMHLPQTDEKKRIIINDQGEF
KAIAEWLLETDGTALMKVLSERDVDPVRTSSNDILEVFEVLGIEAVRKCIEKEMNAVLMF
YGLYVNYRHLALLCDVMTSKGHLMAITRHGINRQDTGALMKCSFEESVDVLMEAASCAEV
DPIRGVSENIMLGQLPKIGTGSFDLVLDDNKCKLGMEIPMPGAGMMMGGGFGAASPSSGM
TPAQTPWCSGATPSMSPYGAFTPGLGTGMTPGGPSFSPAPASETTGLSPGYSPAWSPQPG
SPGSPGGMSPYFPSPANPLSPSYSPSSPAYQPTSPSMTPASPGYSPTSPTYSPTSPQYSP
TSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAPNYSPSSPGYSPTSPS
YSPTSPSYSPTSPSYSPSSPQYSPDSPSYSPSSPKYSPTSPNYSPTSPTYSPGSPSYSPS
SPKYSPTSPTYSPTSPSYSPSSPKYSPTSPNYSPSSPKYSPTSPTYSPSSPQYSPSSPKY
SPTSPTYSPSSPKYSPTSPTYSPTTPGYSPTSPLYSPSYEEDEEEQRRKQKKKSKR
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggacaacagtaaggccaccttgcggcctgtccgcagaattcagtttggcatc
ctgagtcctgatgaaattagacgaatgtcagccacagaaggtggcattaaatatgcagaa
gtttacgaaaatggacgaccaaagttgggtggcttaatggatcctcgtcaaggatgcatt
gataggaacacaagatgcataacctgtgctggaaatatgacagattgtccaggccacttt
ggtcatatggagcttgccaagccagtttttcatataggatttgttactaaaaccatcaag
attcttagatgtgtctgcttctactgcagtaaacttctcttcaatgcacaaaatccaaaa
attcgtgaaattgtgaccaaatccaagggtcagccaaggaagcgtcttcttcatgtttat
aacttgtgcaaatctaagatgatttgtgaaggaggtgatgatgttgatgttggcaaagat
cctgaggatcctagtgtattgaagaagggcagtggccatggaggttgtggtcgctaccag
ccaaaaatcaagcgagtggggttggagttgattgccgagtggaaacatgtcaatgaggat
actcaggaaaagaagcaagttctaacagcagaacgtgtttatgaaatcttcaaacacatc
acagatgaagaatgttatttgttgggtatggatccaaaatatgcccgcccagattggatg
atcttgacagtgttaccagtaccacctcttcctgttcggcctgctgttgttatgcatggt
tcagctcgaaatcaggatgatcttacgcacaaacttgcagacatcatcaaggcaaataat
gaacttattcgaaatgaacaagcaggtgctgctgcacacattattgttgaaaatatcaag
atgcttcagtttcatgttgcaactcttactgacaatgatatgccaggtatgcctagagcc
ttgcagaagtcaggaagacctttgaaagcaatcaaagcaaggttaaaaggtaaagaaggt
cgaattcgaggtaatctcatgggtaagcgtgttgacttctcagcacgtactgtcattact
gcagatccaaatctacgtattgatcaagtcggggtcccgaggtcaatcgcacagaatctt
acctatccagaaattgtcacaccgttcaatattacaaaaatgcaggagcttgtaaagcga
ggcaacaaccagtatcctggggccaagtacatagttcgtgataatggagcacgtatagat
ttaaggtaccaccccaaaccatctgacctccatttgcagtgtggttataaagtagaaagg
cacatcacagatggagatttggtcatcttcaatcgacagccaactctgcataaaatgtcc
atgatgggtcacagagtgaaagttcttccgtggtcaacattccgcatgaacctttctgta
acatctccatacaatgctgattttgatggtgatgaaatgaatttacatgtgccacagagt
atggaaacaagggctgaaattgagaatcttcatgtgaccccacgcatgatcatcacacca
caggctaacaagccagtcatgggaattgtgcaggacacactcacagctgtcagaaaacta
acaaaaagagatgtttttcttgagaaggctgaaatgatgaacctactgatgttcttgcct
atttgggaaggtcgcatgcctcagccagctgttttgaagcccaaacctttgtggactggg
aaacagctcttttctctcatcattcctggaaaccttaacctggtcaagacacattccacg
catcctgatgatgaagatgatggaccttacaaatggatatctcctggagacacaaaggtt
ttggtggaacatggagaactggtcactggaattctttgcaagaaaactttaggagcttct
tctgggtctatgttgcatgttgcttggatggaattaggtcatgaaattgctggtagattt
tatggtaacattcaaactgtggtaaacaattggctgttgcttgagggtatgagcataggt
attggtgatactatttcagatcctgccacttacagagtcattcaggacaccatccggaaa
gctaaggaggatgtaatagaggttattcataaagctcacaatgatgaacttgagcctaca
ccaggtaacacattgaggcagactttcgagaatcaagtaaatcgtattctgaatgatgct
cgagacaaaactggtggttctgctaaaaagtcactgacagaatacaacaatctaaaggct
atggtagtgtcaggttcaaaaggatccaatattaacatttctcaggttattgcttgtgtg
ggtcagcagaatgtagaaggtaaaagaattccttttggtttccggaagagaaccttgcct
catttcattaaagatgattatggtcctgagtccagaggtttcgtggaaaattcatatctt
gcaggactgaccccttcagagttctattttcacgccatgggtggtcgtgagggtttgatt
gatactgctgtaaaaactgctgaaactggctacattcagcgtcgactgatcaaagctatg
gagagtgtaatggtaaactatgacgggacagtcaggaacagtgttagtcaggtgattcag
ctcagatatggcgaggatggtttagcaggagaatatgtagagttccagaagatgccaact
gtcaagttgtccaatcgtcggtttgaagatagatatagatttgatgttacaaatgaaagg
tatttgagacgtttgttcaatgaagatgtggtacgcgagttgatcggctctcctgaagct
attagtactctcgaaggagaatggcagcaacttcaagaagatcgagttggtctgagagaa
gttttccccaagggtgatacaaaggtggtgttgccatgcaacttagagaggatgatctgg
aatgtacagaagatctttcatattaacaaacgaactccaaccgacttatcacctgtaaag
gtggtggaaggtgtaagagatatgcttgtgaaatgtaacattgtgactggagaggatcgt
attagtgtacaggccaacaggaatgccacattctgtttccagtgtttagtgaggtctaca
ttgtgcaccaaaaaagttgctgaggaatacaagttaactacagaatcattcaactggttg
attggtgaaattgaaacaaggttccatcaggcaattgctgctccaggtgaaatggtagga
gcccttgctgcccaatcccttggtgaaccagccactcagatgacactgaacactttccat
tttgctggtgtgtcttctaagaatgtaactcttggtgtgcccaggctaaaggaaattatc
aatattagtaaaaaaccaaaggctccttcacttactgtgtttttggttggtgcctcagct
agggatgcagaaaaagccaagaacgttctttgccgtttagaacacactactcttcgaaag
gtaacctccaatacagctatttactatgatccagatccccagaatacctgcatcacagag
gaccaagaatttgtaaatgtttactatgaaatgcctgactttgatgtctcgcgcatttca
ccttggctgcttcgcatagagttggatcgtaaaaaaatgactgataagaagctgaccatg
gagcaaatttctcagaagatcaactctggatttggtgatgatctgaattgcatctttaat
gatgacaatgcagagaagcttgttcttcgtatccgtattattgttggtgatgacaaactt
gcggacgatgctgaagagcaggtggacaaaatggaggatgatacatttttgcgttgcatt
gaagctaacatgctgaatgatttaactcttcagggcattgaagccatcactaaagtatac
atgcacttaccacaaactgatgagaagaaaaggattatcattaatgaccagggagaattc
aaagccattgctgaatggttacttgaaactgatggtacagctttaatgaaggttctgtca
gagcgtgatgtagatcctgttcgtacatcatccaatgacattttagaagtttttgaagtc
ttgggtattgaggctgtacgtaaatgtattgaaaaggaaatgaatgctgtgctgatgttc
tatggcttgtatgtaaattatagacatcttgctttactttgtgatgtaatgacaagcaaa
ggtcatttgatggctatcacacgtcatggtattaacaggcaggacactggagcgttgatg
aaatgctcatttgaagagtctgtcgatgtgctgatggaagctgcttcgtgtgcggaggta
gatcctatacgaggtgtgtctgagaatattatgttgggtcagcttcccaagataggcacc
gggtcctttgatcttgtgcttgatgataacaaatgtaaattgggtatggaaattcctatg
cctggagctggtatgatgatgggaggaggatttggtgctgcttcaccatcatcaggcatg
actcctgcccagactccttggtgttcaggagcaactccctccatgtctccatatggtgcc
ttcactcctggtttgggcacaggcatgactccaggaggtccatccttttctcctgctcct
gcaagtgagacaacaggtctttcaccaggatactctcctgcttggtcaccacagccaggt
agcccagggtcacctggtggaatgagtccttatttccccagcccagccaatcccctttct
ccttcgtactctccttcttccccagcatatcaaccaacatcaccaagcatgacaccagca
tcacctggttattcccctacttctccaacatacagtcctacatccccacagtactcgcct
acatccccacagtactctccaaccagtccatcttattcaccaacatctccctcatatagt
ccaacatctccatcatattccccaacatctccttcatattctccaacatctccttcatat
tccccaacatctccatcatattcacccacttccccatcatactctcccacttccccgtca
tattccccaacgtcacccagttacagcccaacatcaccatcatactcaccaactagtcca
tcatactcaccaacttcaccttcatattcaccaacatcaccatcttactcgccaacttcc
ccatcttatgcacctaattattctccttcttcacctggctattccccaaccagtccgtca
tattccccaactagtccctcgtattccccaactagtccctcatattccccaagttctcct
caatattcaccagactcgccttcatattctccaagctcaccaaagtattcccctaccagt
ccaaactactcccctacaagtcctacttattccccaggatcaccttcttattccccaagt
tccccaaaatattcgccaaccagccctacatactccccaacatcaccatcatattcacct
tcatctcccaaatattcaccaacttcacccaactactcaccatcatctcctaaatactct
ccaacatcaccaacatatagtccttccagtccacaatacagcccctcaagtcccaaatat
tcccctacatctcccacctacagcccaagtagtcccaaatattcccctacaagtcccact
tacagccctaccacaccaggttatagcccaacatcacctctttattccccaagttatgaa
gaagatgaggaagaacagagaagaaaacagaaaaagaagtccaaacgttaa
DBGET
integrated database retrieval system
