Macrobrachium nipponense (oriental river prawn): 135201676
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Entry
135201676 CDS
T09903
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135201676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135201676
03036 Chromosome and associated proteins [BR:
mnz03036
]
135201676
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135201676
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135201676
mRNA degradation factors
5'-3' decay
Decapping complex
135201676
Chromosome and associated proteins [BR:
mnz03036
]
Eukaryotic type
Gene silencing
piRNA pathway
135201676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
135201676
NCBI-ProteinID:
XP_064086873
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All DBs
Position
23:complement(77730790..77760261)
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AA seq
443 aa
AA seq
DB search
MADKATIPNHTSPVKSLLNNQVVKAVDDKSWKAQIPIPPRDRRKRTSDVTDTKGNEFEDF
CLKRDLLMGIFEKGWERPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPLLEQIDPS
QNHIQAMVIVPTRELALQTSHICNELAKHLGVKVMVTTGGTNLKDDIMRIYETVHAVIAT
PGRILDLMEKKVATVDKCRMLVLDEADKLLSQDFKGMLDRVISYLPSERQILLYSATFPL
TVEQFMKKHLRSPYEINLMDELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCN
STQRVELLAKKITELGYSCYYIHAKMAQAHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQA
VNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIEQELGTEIKPIPK
VIDPALYVAEHHLEDDDEGNISK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaggccacaataccaaatcacacttctcctgttaaatctttgttaaacaac
caagtagtgaaagcggtagatgacaaatcttggaaagcacagattccaatccctccaaga
gatagaaggaaacgaacgtctgatgtaacagacacaaaaggcaatgagtttgaagacttc
tgtttgaaacgagacctgctcatgggtatatttgagaagggatgggaacgcccatctcct
atccaggaggcatccatacctgtagcattaagtgggagagatatcctagcacgtgccaaa
aatggcactggtaagactggggcatactctattcctctcctagaacagatagacccttct
caaaaccacattcaggccatggttattgtgcctacaagagaattggcactgcagactagt
catatttgtaatgagttagcaaagcatctaggtgttaaggtcatggttacgacgggaggc
accaatttaaaggatgatatcatgagaatttatgaaactgttcatgctgtaattgctact
cctggaaggatcttggatctcatggagaagaaggtggctactgttgacaagtgcagaatg
ttggttttagatgaggctgataaattgctatcacaagatttcaaaggaatgctagacaga
gtgatctcatatttgccatcagaaagacaaattttattgtattctgccacttttcctctg
actgtggagcagttcatgaagaagcatttaagatctccttatgaaataaatttgatggat
gagttgacattgaaaggagtaacacagtactatgccttcgttcaggaacgtcagaaggtc
cattgtttaaatactttgttttcaaagttacagatcaaccaaagtataatcttctgcaat
tcaacgcagcgtgtggaattactagccaagaagatcacagaattggggtattcttgttat
tatattcatgcaaaaatggcacaggcacatcgtaaccgcgtcttccacgatttccgtgcg
ggactctgcaggaatttggtttgttcagatttgtttacaagaggtattgatatccaggca
gtcaatgtggttataaattttgactttcccaaaatggctgaaacatacttgcacaggatt
ggaagatcaggacggtttggccacttgggtattgccattaatctgataacttatgatgat
agatttgccttgcatcggattgaacaggaactaggaacagaaatcaaaccaatacccaag
gtgattgaccctgctttgtatgttgctgaacatcacctggaggatgacgatgaaggaaat
atcagtaaataa
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