Macrobrachium nipponense (oriental river prawn): 135203092
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Entry
135203092 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135203092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135203092
03041 Spliceosome [BR:
mnz03041
]
135203092
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135203092
Spliceosome [BR:
mnz03041
]
Complex B
Other components
Prp19-related factors
135203092
Complex C
135203092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
NRDE-2
DALR_1
ARM_TT21_C
Phage_C
HAT
Motif
Other DBs
NCBI-GeneID:
135203092
NCBI-ProteinID:
XP_064088785
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All DBs
Position
33:34788264..34829828
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AA seq
855 aa
AA seq
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MIMDASTIVIETDDLQYEEELLRNPYSVKHWLRYIEHKKDGAPKKLNIVYERALLQMPGS
YKLWHLYLRLRMQQVKGRCITDPEYESVNNTFERALVFMHKMPRVWIDYCQFLINQKKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMSYRIPETAVRVWRRYLKLCPEDTEDYINYL
MSIGRLEEAAKKYEWCVNTDTFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISTLFERARDVYEEALRSVMTVRDFTQVFDAYAQFEELML
KQRMEEVALTDGDVEEETELELRLARYEDLIQRRPLLLNSVMLRQNPHNVLEWQKRVTLY
EGKPKKWGGIVATYMEAVKTIDPKQATGKLYSLWVDFAKFYEDNSQIMDARIIFQRATEV
PYVKVDDLASVWCEWAEMEIRHDNEEEALKLMKRATAPPPHKVAYNDESEPVQRRVYKAL
KNCGPCADLEESLGTFKSCKAVYDRIIDLRIATPQIIINYGMYLQENXYFEEAFKGYEKG
IALFKWPYVYDMWNTYFMRFLDRYKGTKIERARDLFEQCLEKCPPKYARNLYLLYAKMEE
EHGLARHAMQIYSRATKAVPPEEKLSIYNIYLQHAQQIYGVTRTREIYQEAIDDLPDEGA
REMCLRFAEMERKLGEIDRAREIYVYCSQICDPRVTADFWAKWTDFEVAHGNEDTMKELL
RIKRSMQAKYNTQVNMMSAQMLASAGTVAGTVSDLAPGAKDGMRMLEARAFAMNKADEQN
PPTTSAPSAPGGSKILFVRGSTTKRDDEVADTARATNPDEINLDEDDDDDEEDDEEDIPQ
QREVPSAVFGQLKQE
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgattatggacgcgtcaacgatagtcatagaaactgatgatttacaatacgaagaggaa
ctacttcgaaacccctactcagtcaaacactggttgcgttatattgagcacaaaaaggat
ggggctcctaagaagctcaacattgtctatgaaagagctctattgcagatgccagggagc
tataaattgtggcatttgtacctaaggttgcgcatgcagcaagtcaaaggtcgctgcata
acagatcctgaatatgagagtgtcaacaatacatttgagagggctttggtcttcatgcac
aagatgcctcgtgtttggattgattattgtcagtttctaataaaccagaaaaagattaca
agaactagaaagacatttgaccgagccctgtgtgctttacccattacacaacataacaga
atttggccactttacttgaaatttgttatgtcttataggatacctgaaactgctgtcaga
gtgtggagaagatatctaaagctatgtccagaagacactgaggactacattaactacctc
atgtccattggaaggctagaagaagcagccaaaaagtatgagtggtgtgtcaacacagac
acctttacctccaagtatggcaaatcaaagcaccagttgtggtctgagctttgtgaactg
atctcaaaaaaccctcaggaaaccagtttaaaaaatgctgaggctatcattcgtcatggt
ctacagaggtacacagatcaagtaggcatgttgtggaattcattagcagaatactatatc
attagtactctcttcgaaagggccagagatgtttacgaagaagccctgcggagtgtcatg
actgtgagagattttactcaagttttcgatgcttacgcccagtttgaagaattgatgttg
aagcagcgtatggaggaagttgcattaacagatggagatgtagaagaggaaactgaatta
gagctgaggctggcaagatatgaagatctcatacaaaggcgtccattgttacttaactcg
gtgatgctacgacagaatccccacaatgtcttggagtggcagaagcgtgtcactttatat
gaaggaaagccaaaaaaatgggggggtatagtggcaacgtatatggaagcagtcaagacg
attgaccctaaacaagccactggtaaactttattctctgtgggttgactttgccaaattt
tacgaggacaacagtcaaatcatggatgcccgcatcatcttccagcgggctacagaagtt
ccatatgtaaaggttgacgacttagcgagtgtgtggtgtgaatgggctgaaatggagatc
aggcatgacaatgaggaagaagctctgaaactaatgaaaagagctacagcaccacctccg
cataaagtagcttacaatgatgaatcagaacctgtgcagcggcgagtatacaaggctttg
aaaaactgtggtccatgtgctgatctagaagaaagcttgggaactttcaaatcatgtaaa
gctgtgtatgacaggatcattgaccttcgaattgccacaccacagataatcataaactat
ggaatgtatttacaggaaaacnaatactttgaggaagcttttaaaggctatgaaaaaggg
atcgcacttttcaagtggccctatgtgtatgatatgtggaacacctatttcatgaggttt
ttagatcggtacaaaggaacaaaaattgaacgagcaagagatttgtttgagcagtgtttg
gaaaaatgcccacccaagtatgccagaaatttgtatctattgtatgcaaagatggaggag
gagcatggcttagccagacatgcaatgcagatctacagcagggccacaaaagctgttcca
cctgaagagaaattgtcaatatacaatatatatctacaacatgcacaacaaatatatggt
gtgacaagaacgagagagatatatcaggaagctattgatgaccttccagatgagggagca
agagaaatgtgtctgcgttttgcagagatggagcgcaaacttggagagattgacagggct
cgagaaatttacgtctactgcagtcagatatgtgatccacgtgttactgctgatttttgg
gccaagtggacagactttgaagtggctcatgggaatgaggacacaatgaaagaactattg
agaattaagcgttcgatgcaggctaaatataacacacaggtgaacatgatgtcagcgcaa
atgttagcttctgccggaacagtggctgggacagtatctgacctggcaccaggtgctaag
gatggcatgcgtatgcttgaggcccgtgcttttgccatgaataaggctgatgaacagaac
cctcccacaacctcagctccatctgccccaggagggtccaaaattctctttgtccgtgga
tcaaccaccaagagggacgatgaggttgctgacactgcacgtgccactaatcctgatgaa
attaacctggatgaggatgatgatgatgatgaagaggatgacgaggaagacattcctcaa
caacgtgaagttccttcagcagtatttggccaactcaaacaggaatag
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