Macrobrachium nipponense (oriental river prawn): 135203596
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Entry
135203596 CDS
T09903
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03013
Nucleocytoplasmic transport
mnz03015
mRNA surveillance pathway
mnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135203596
09122 Translation
03013 Nucleocytoplasmic transport
135203596
03015 mRNA surveillance pathway
135203596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135203596
03041 Spliceosome [BR:
mnz03041
]
135203596
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135203596
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135203596
Spliceosome [BR:
mnz03041
]
Complex C
Other components
EJC/TREX
135203596
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135203596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
135203596
NCBI-ProteinID:
XP_064089459
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All DBs
Position
36:45073711..45107089
Genome browser
AA seq
432 aa
AA seq
DB search
MAEPEAEPELLDYEEEEEAPAEGAAAADEAAGAAPAKKDVKGTYVSIHSSGFRDFLLKPE
ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIDPVDGQVS
VLVMCHTRELAYQIAKEYERFTKYMPNVKVGVFFGGMNVSKDEETLKSNCPHIVVGTPGR
LLALIRGKKLNLKNLKHFVLDECDKMLVQLDMRRDVQEIFRNTPHEKQVMMFSATLSKEI
RPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVK
SVQRCMALAQLLVEQNFPAVAIHRAMGQEERLSRYQQFKDFQKRILVATNLFGRGMDIER
VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSEEADAKVLNDVQERFDVNITELP
EEIDLSTYIEGR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccagaggcagagcctgagcttctcgattacgaggaggaagaagaggcacca
gcagagggagctgcagctgctgatgaggcagccggggccgccccagccaagaaagatgtg
aagggtacttacgtatccatccactcctctggtttcagagatttccttctcaagccagaa
atcttgagggccattgtggactgtggctttgagcatccttcagaagttcagcatgaatgc
atcccccaagcagttcttggcatggatattctctgccaagccaagtctggtatgggaaaa
accgcagttttcgttcttgcaactctgcagcagatagatcctgttgatggacaggtttca
gtgctggttatgtgtcacacaagagaacttgcatatcaaattgcaaaagaatacgaacgt
ttcacgaagtacatgcccaatgtcaaggtgggagttttctttggaggtatgaatgtcagt
aaggatgaagagacactgaagagtaactgcccacacattgttgtaggaacacctggtcga
ctcttggctctcattcgtggcaagaaacttaaccttaagaacttgaagcattttgttctg
gatgaatgtgacaaaatgctggttcagttggatatgagacgtgatgttcaggagatcttc
cgtaatacaccccatgaaaagcaggtcatgatgttcagtgcaaccttgagcaaagaaatt
cgcccagtatgcaagaagttcatgcaagatcccatggaggtgtatgttgatgatgaagca
aagttgacccttcatggtctgcagcagcattatgtgaagatcaaagaaaatgaaaagaac
aggaagttattcgaattgctggatgctctagagtttaatcaggttgtgatctttgtaaaa
agtgttcagcgttgtatggctctagcacagctgctagtagaacagaacttccctgcagtt
gctatccacagagccatggggcaagaagaaaggttgagtcgttaccaacagttcaaagat
ttccaaaaacgtattctagtagctaccaacctcttcggtcgtggtatggatattgaacgt
gtgaacatagtcttcaactatgatatgccagaggatagtgacacctaccttcacagagtt
gccagagcaggaagatttggtaccaaggggttggctataacattcgtcagtgaagaagct
gatgccaaagttctgaatgacgtacaggagaggttcgatgtgaacattactgaattacct
gaagaaattgatttgtctacgtacattgaaggtcgttag
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