Macrobrachium nipponense (oriental river prawn): 135204894
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Entry
135204894 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03420
Nucleotide excision repair
mnz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135204894
09124 Replication and repair
03420 Nucleotide excision repair
135204894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mnz04121
]
135204894
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135204894
Ubiquitin system [BR:
mnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
135204894
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
135204894
TCR (transcription coupled repair) factors
Cul4-CSA complex
135204894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Lgl_C
Motif
Other DBs
NCBI-GeneID:
135204894
NCBI-ProteinID:
XP_064091209
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All DBs
Position
47:complement(35262149..35323943)
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AA seq
1137 aa
AA seq
DB search
MAAAAYNYVVTAHKPTAVTACATGHLTSPTDLNLVVARNNRVELHLVTPEGLRPLKELTI
YGKISCMHLFTPQDESKDLLFILTMRYCAMILECEGDGEHCEILTRAHGNVADKIGKACE
TGMIAIVDPQARCIVLRLYEGLIKVIPLDKDNSELKAYNIRVDELQIQDIAFLYGCSNPT
IIIIYQDTHGRHIKTHEISLKEKEFSKMPWKQDNVETEASIIITVPEPYGGAIIIGQETI
TYLTGTSHVTVAPPLIKTSTIVCYAKVDSNGSRYLMGDMSGRLFMLLLDKQDDRVEATVK
VELLGEISIPECLTYLDNGVVFVGSRLGDSQLIKLNTEPDSSGQYVSVMQTFNNLGPIID
MVVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEQASIELEGIKGMWSLSVNSPKHH
NTIVLSFVGLTRVLTLSGEEVEETEIAGFVSDQQTFLSSNVIYEQLLQVTGSSCRLVSES
SGQLVCEWRPPEGRNISVVAANTNQVVAAAGQHIYYLTIQPNTLQLEASTTVEHEVACLD
VSPLWEEEMASVVAVGLWTDISARVLTLPTLEENAKEFLGGDIIPRSIIMTTFEGNHYLL
CAMGDGQLFYFTYSPSTGYLSDKKKVVLGTQPTTLRRFRSLSSTNVFACSDRPTVIYSSN
HKLVFSKVNLREVTHMCPLNAEAYPSSLALATSEGITIGTIDEIQKLHIRTVPLGETARR
IAYQEETETFGVITMRVDVMDSNGIRSGGMCASLGAHSSSSASNTSSLLKPPVQPPPEPG
QEVETHNLLIISQNTFEVLHCHSFHAGEYALSICSTKLKDDPTIYYVVGTALVNPEESES
KLGRIILFSFTDGKLQQVAEKEIKGACYSLCEFQGKLLAAISSTVRLFEWTNERELRLEC
SHFNNVAALYLKTKGDFILVGDLMRSMTLLQYKTLEGSFEEIARDYDPNWMTAIEILDDE
LFLGAEHSYNLFVCHKDSAATSDEERQQMQEVGRFHLGDFVNVFRHGTLVMQGVPEATTV
TQGCVLYGTVHGSIGLVTSLNLDLYNQLLEMQKRLAKVIKSVGKIDHDFYRSFSTDRKTD
RCEGFIDGDLIESFLDLTPDKMKEVAHGLLINDGSGMKTEATPDDLIKTVEELTRIH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagccgcctacaactatgttgttacagctcacaaaccgacggccgttacagcc
tgtgctacagggcacctgacatcgccaacagacctgaacttggtggtggcgaggaacaac
cgcgtagagctccatttggtgaccccagaaggcctgcgtcccctgaaagagctgactatt
tacgggaagatatcatgtatgcatttattcacaccacaggacgagtcgaaagacttgctc
ttcatcctgaccatgcgttactgcgcaatgatcctggagtgcgagggagatggggagcat
tgtgaaatcctcaccagagcacatggaaacgtcgcagacaaaattggaaaggcctgcgag
accgggatgatagccattgtagacccacaggccaggtgcattgttctccgcttgtacgaa
ggcctcataaaagtgattcccttggataaggataacagtgaattgaaggcctataatatt
agagtggatgagctccagattcaagatatagcattcttgtacggatgctcaaaccccacc
atcatcatcatatatcaagacactcatggacgtcacatcaagacccatgagatctctctc
aaggagaaggaattctccaagatgccgtggaaacaagacaacgtggagaccgaggcatcc
atcataataacagttcccgaaccgtacggaggtgccatcatcattggacaggagacaatc
acgtacctgactggcacttcacatgtaacagtggctcctccgctcataaagacgagcacc
atagtgtgttacgcgaaggtagattccaacggctcaaggtacctcatgggtgacatgtct
ggccgcctgttcatgctgcttttggacaagcaggatgatcgggtcgaagcaacagtcaag
gtggagcttttgggtgaaatctcgatcccagagtgtctcacgtacttggacaacggtgtc
gttttcgtgggctccaggctgggagactcgcagctcataaaactcaacacagagcccgat
tcctccggccagtatgtttctgtcatgcagaccttcaataacttgggtcccatcatcgac
atggttgtcgttgacttggaacgacaggggcagggccagctcgtgacctgttcgggggcc
ttcaaggagggatctctccgaatcatccggaatggtatcggcatccacgaacaagcttcc
attgagctggagggcatcaaaggaatgtggtctctgagtgtaaactcgccaaagcatcat
aacacgatcgttctctcctttgttggtcttacaagggtgctcacactaagcggagaggag
gtagaggagacggaaattgctggatttgtctccgatcaacagactttcctgtcttcaaac
gtcatttatgaacaacttcttcaggtgactggcagttcgtgccgtttggtcagtgagagc
agtggccagttggtgtgcgagtggcggccgccggaaggacgtaacatctctgtagttgca
gcaaacaccaaccaagtggtagcagcagctggccaacatatttactacctcaccatccag
cctaacacactgcaactggaggcgtcaacaacagtggagcacgaagtggcatgccttgat
gtctcgcccctgtgggaggaggagatggcgtctgttgtagcagttggtctgtggactgat
atttctgcgcgggtgttgaccctgcccaccctcgaagaaaatgccaaagaattccttggt
ggagatataattcctcggtcgataatcatgacgacgtttgagggtaatcattatctcctg
tgcgccatgggagatggacagcttttctacttcacttactccccttcaactggttacctg
tcggacaagaagaaggtcgttttaggcacccaacccacaacactccgcagattccggtct
ttgtcgtcgaccaacgtgtttgcctgctcggacagaccgacggtcatttactcgtccaat
cacaaattggtgttttccaaagttaacttgagagaagttacgcacatgtgtcccctcaac
gcagaggcttatccaagcagtttggctcttgccacaagcgaaggcatcactattggaacc
atcgacgaaatccagaagctgcacatccgcaccgtacctttaggagagaccgcacgtcgc
atagcatatcaggaagaaacagagacgtttggcgtcatcacgatgcgagtagacgtcatg
gacagcaacggcataagaagcggaggcatgtgtgcctccttgggagctcactcgtcgtca
tccgcttcgaacacatccagtttgctcaagccccccgttcagcctcccccagaacctggt
caggaggttgaaactcacaatctgcttatcatatcacaaaatacatttgaagtcctacac
tgtcacagtttccacgccggggagtatgctctgagcatctgttccacgaaactgaaggac
gaccccactatatattacgtggtgggaaccgctttggtcaatcccgaggagtcagaatca
aaactgggtcgaattattctcttctccttcaccgatgggaaactccagcaggtagcagag
aaggagatcaagggagcctgctattccctctgcgaattccaaggaaagctgctggctgcc
atttctagcacagtgagattgttcgagtggactaacgagagggagctgcggctggagtgc
tcccacttcaacaacgttgcggccctctacctgaagacaaaaggggacttcatcctcgta
ggggacttgatgaggtccatgaccttgctgcagtacaagactttggaaggcagctttgaa
gagatcgccagagactacgaccccaactggatgacagcaattgagattttggatgacgaa
ttatttttgggtgccgaacactcgtataacctcttcgtctgtcacaaagatagcgcggca
acgtcagacgaagaacgccaacagatgcaggaagtgggacgcttccatttgggagatttc
gtgaatgtcttccgtcacggaactttggtcatgcaaggtgtacctgaggccaccacagtc
acccagggctgtgtgctgtatggaacagttcacgggtctattgggttggtgacgagcctg
aacttggacctgtacaaccaactgctcgagatgcagaaacgcctggctaaggtcatcaag
tccgtcgggaaaatcgatcatgatttttataggagttttagcaccgatcgcaagacggac
aggtgtgagggattcatagacggcgatttgatcgagagctttttagatctgacgccggac
aagatgaaggaggttgcgcatgggttgttgataaatgacggatctggcatgaagacggaa
gccacacctgacgacctcatcaagacagtcgaggagctgaccaggatccactga
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