Macrobrachium nipponense (oriental river prawn): 135204972
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Entry
135204972 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mnz01009
]
135204972
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135204972
04131 Membrane trafficking [BR:
mnz04131
]
135204972
03036 Chromosome and associated proteins [BR:
mnz03036
]
135204972
Enzymes [BR:
mnz01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
135204972
Protein phosphatases and associated proteins [BR:
mnz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135204972
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
135204972
Membrane trafficking [BR:
mnz04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
135204972
Chromosome and associated proteins [BR:
mnz03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
135204972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
VPR
Motif
Other DBs
NCBI-GeneID:
135204972
NCBI-ProteinID:
XP_064091273
LinkDB
All DBs
Position
48:complement(19065438..19088842)
Genome browser
AA seq
806 aa
AA seq
DB search
MRNIRNLQETYKSVYLHPSSNDAALMSSGSLLQVVDSVCSGESQSGIGVIRPPGHHAEMD
HPHGFCLYNNVAVATKYAAQKYGYQRILVLDWDVHHGNGIQHAFESXPSVLYVSIHRYDD
GLFFPSSEDANYDQVGVGKGEGFNVNIPWNKSGMGDAEYMSAMLQVVMPIAYQFDPQLVI
VSAGFDAARGDPLGGCRVTPECYGHMTHLLTSLAGGRIILALEGGYNLNVISYCMTMCAK
ALLGDPMPALDKALCQIREPWRPFQRHPGALKILVFLMFSASSIAHEKKYTSVVFGESCR
AGCKSETLQNIRTHLQEFQLLETCNIIPSREARKEEFSFLFNDGIGEERMSEEEKDRVLT
SVGNAVDMISEVVFYRCQNGIVLVPCGNADTGTFSLCDIASFSAKHTIDNLNVQRVMIVD
LDCSTNRDCHAFCGDKRILTFCLRLHGNQQCQSSGKESTKGCESCDRNIKLNLGCQNFHM
ENYYTLFHQLILPVAYEFAPEVIVVVSNYEAAAHCANVFPIVYAHLVGQLMALANGRIVA
LSGTSQHEAVTKECISAVFSALQDIPCSSAPKVMESASPLAKAEVLEVISAKRNDWKTLQ
CHAQTSCALSYSRKPDDSTQECCGRDSVSDFKRYAKSSADEAELPLCLVYDESMLEHFSY
EDRTHPECPDRIRCIYQRLQEFRIVERCLRVKARPAFVRELEELTTAHKDTCGLMSSLVS
KKPSDLQNLQENYESVFFHRQTHNAALMAAGSVNAVVDSVLKEYYNNCQYDNKSIEKEYE
EYKYEDVIKKAIYVHLKTGCSKELIE
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacattaggaacttacaggagacttacaagtcggtgtatctccacccctctagt
aatgatgcggccttgatgtcatcaggcagtttgctgcaggttgtggatagtgtctgcagt
ggagaaagccagtcaggaattggggttattcgcccaccgggtcaccatgctgaaatggac
caccctcacggattctgcctctataataatgttgctgttgcaaccaaatatgctgctcaa
aagtatggatatcaaagaatcttggtccttgattgggatgttcatcatggtaatggaatt
cagcacgcattcgagtcgnacccttctgtgctgtatgtgtccatacaccgctacgatgat
ggcctgttcttcccatcttcggaggatgcaaactatgaccaagtaggcgttggaaaagga
gaaggtttcaacgtcaatattccttggaataagagtggcatgggagatgctgaatacatg
tctgcaatgctgcaggttgtaatgcccattgcataccagtttgatccacagctggttata
gtgtcagcaggatttgatgccgcaagaggggatccccttggaggttgccgggttactccc
gagtgctatggccacatgacacatctactgacctccttagccggcggccgcatcatcctt
gccttagaaggtggttataatctcaacgtcatcagttactgtatgaccatgtgtgcgaaa
gctcttcttggagacccaatgccagctttggataaagctctgtgccaaataagagagccg
tggagaccattccagcgtcatccaggtgcactcaaaatattggtcttccttatgttttca
gcttcaagcattgcccacgagaagaaatacacttccgttgtgtttggtgaaagttgcagg
gcaggttgtaaaagtgaaacacttcaaaatatcaggactcatttacaggaattccagctt
cttgaaacttgcaatattataccttctagagaagcgagaaaggaagaattttcttttctt
ttcaacgatggcattggtgaagaacgtatgtctgaagaagaaaaggaccgtgtattgaca
tctgttggaaatgctgtcgatatgatctccgaagtagtcttttataggtgccagaatggc
attgtcctcgtgccatgtggtaatgctgatacaggaacctttagtttgtgtgatattgct
tcttttagtgcaaaacatactattgataacttgaatgtccagcgtgtaatgatcgtagac
ttagactgtagtacaaatcgagattgccatgctttttgtggtgataagagaattctgact
ttttgccttaggttacacggtaatcaacagtgtcagagtagcggaaaggagagtacaaaa
ggctgtgaatcttgtgatcgtaacattaaattgaacttgggttgccagaatttccatatg
gaaaattattatactctatttcaccagctcattttgccagtcgcttatgaattcgctccc
gaagtcattgtagtcgtcagcaactacgaagctgcagctcattgcgcaaatgtctttcca
atagtttatgctcatttggtagggcagttgatggctttagcaaatggtcggattgtagca
ttaagtgggaccagccagcatgaagcagtaactaaggaatgcatttctgctgtcttttct
gccctccaagacatcccttgtagctctgccccaaaggtaatggaaagcgcatcgccatta
gccaaagcagaagttctagaggtcatcagtgctaaaaggaatgattggaaaacattgcag
tgccatgcccagacttcatgtgccttgtcatacagtcggaaaccagacgattctacgcaa
gaatgttgtggacgtgactctgtcagtgactttaagagatatgccaagagttctgcggat
gaggctgagcttcctttgtgccttgtgtatgacgagtccatgctggaacacttcagctac
gaagacaggacacatccggaatgtccagaccggatcaggtgcatataccagcgcttgcag
gaattcagaattgttgaacgttgcctccgtgtcaaggcaaggccagcatttgtcagagaa
ctggaggaattgaccacagcccataaagacacctgcggtttgatgtccagtttagtgtcg
aagaagccaagtgatcttcaaaatttgcaggaaaattatgagtcggttttctttcatcgc
caaacacacaatgctgctttgatggcggctggatctgttaatgctgtcgtggatagcgtt
ctaaaagagtactacaataattgtcaatatgacaataaatctattgaaaaagaatatgaa
gaatacaagtatgaagatgttataaagaaagctatttatgtgcacttaaaaactggttgt
agtaaagagttgatagaataa
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