Macrobrachium nipponense (oriental river prawn): 135208074
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Entry
135208074 CDS
T09903
Name
(RefSeq) DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mnz03009
]
135208074
03012 Translation factors [BR:
mnz03012
]
135208074
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135208074
5.6.2.5 RNA 5'-3' helicase
135208074
Ribosome biogenesis [BR:
mnz03009
]
Eukaryotic type
Other ribosome biogenesis factors
135208074
Translation factors [BR:
mnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
135208074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
R3H
SMUBP-2_HCS1_1B
AAA_30
AAA_19
zf-AN1
ResIII
DEAD
UvrD-helicase
nSTAND3
AAA_22
DnaB_C
Viral_helicase1
AAA_16
PhoH
AAA
UvrD_C_2
RuvB_N
T2SSE
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
135208074
NCBI-ProteinID:
XP_064096292
LinkDB
All DBs
Position
34:complement(30130266..30868487)
Genome browser
AA seq
1459 aa
AA seq
DB search
MYQTKSDISRHDWISLHTSLLEEERKTEVSTAQSQEKDLTLKELELRGVVLSKLNIKERS
TGLYGRPMYTFISSRKDATLSTNSFSSGDIVGVHEYGASERKQLTSGVVTRVSQSSIQIV
LDGDADELDSTADGALLYLHKLANNVTYQRIKTGLEELGKLTVGRSSHLTSVLFNEEAPK
LISPRLPELLLQSNGDIMLFNERLDDSQQEAVSYAVRRNDLAIIHGPPGTGKTTTLIEII
RQHIKLKSKILACAPSNLAVDNLVERLAAVGVNVVRIGHPARVTSLTQKYTLDAILHNCE
EAELLKDIHKDISEQLNKLKKTNEKGKRHYIRNEIKLFRKELRERETRLTKQILTTCDVI
LATLTSCGNDGPLRHLPQEHLDLIVIDECSQAIEASCYPSILRAPKVILAGDHCQLPPTI
LSQEAAAKGLALSLMERLIGLYGDTVVRMLTVQYRMNSLIMDWASAALYDDRLTAHPSVA
NHLLSQLKDVTTNDDTEHALMLIDTAGCDCYELNTPEEQSKGNRNEAIVVSCHVKNLLAA
GVPETDIAVITPYNLQVELIRSLLRNHHPQVEVRSVDGFQGREKEAVVISLVRSNEEGKV
GFLSENRRLNVAVTRARRHLCIVGDSETVTRHTFLKTLINYLCEHGIVRSAHEFQNDIDT
VDVEMPESLILIRDKDLKKSKPDSTSDYKKVKQKKASKPPPPTEEENRKRKIEFEKIIKQ
FLDSPSQTHSFAANLNSYERRLIHEIAGSFGLKHESQGEGEERHIVIRKAGEGENQSEKL
PSTKESSEDSKDEIEEEQQVYSLKREYEEIIDDFVGTHANTYKFPHSLSAHERQIVHAAA
EERGLKHESIQEGKKRYVIIHNKNSPLLVPKNDERLNSSIDGSKVNTLKVDDSSDSQALF
TGAIPKAGVISNNENVRPRSNVVTQTRFIDGKYQEVTISTESNVENKLPTKECRSCRRNI
LLQNYTVHSVHCEKQKAVRDEEIKNKTKKPEKKTKKKNKTTQSAEKEDFDTILENFTKVR
KCTMRKLLTPHAVKDSALSTLKVWVGGFGRNVKSKQPYMLTEDMASLIYPNAKMSAAVAA
DLAAPIIAKIREETQALPEDLEGFGEEVLDEVAAINLDHEPMVVDNPGQGRELNEAGGMR
AKVLSFSPSHSSSSSFQGFAGRPTTSRDKSGSVIPKVKPTKDTHRSIKKSLPKPSKPKPI
RTSCTSTSSAPELMADLAKAAPPRQGLRARGSKPGSQDPGFDPATFSSMLMQEMGNLVQT
KFQEISAQLVSSMEKTISTESNVENKLPTKECRSCRRNILLQNYTVHSVHCEKQKAVRDE
EIKNKTKKPEKKTKKKNKTTQSAEKEDFDTILENFTKENNTCSQPKCKTPTTVIFQLCPF
CRKTFCLSHHMAEIHGCGEQARKHARMMVSQEGVLYPGSGVPSKKPSGERRKQMQKKLEK
KMDELESQRKSKKSSKDKS
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagaccaaatcagacatatctcgtcatgactggatatcacttcacacctcactt
ctggaagaagaaaggaaaacagaagtttcaacagctcaaagccaggaaaaggatttaacc
cttaaggaactggagctacgtggagttgttctgtcaaagttgaacataaaggaaagatct
actgggttatatggcaggcctatgtacacattcatctcatccaggaaagatgctacactc
tccactaacagtttttcctctggtgacatagttggtgtccatgagtatggggcaagtgaa
cgaaaacaactgacatctggagttgtgacacgtgtctcacaatcttcaattcagatagtt
cttgatggagatgcagatgaactagattccactgcggatggagctctactttatcttcac
aagttagccaataatgtgacataccagagaatcaaaactggtcttgaagaacttggaaaa
ttaacagttggtcgatcttctcacctgacatctgtattgtttaatgaagaagcacctaaa
ttaatttcgcctcgccttcctgaactgctgttgcaatcaaatggggatattatgctcttc
aatgaaaggcttgatgattctcaacaagaggcagttagttatgctgtgagacgtaatgat
ttagccataatacatggtcctccaggaacagggaaaaccactacattgatagaaattatt
agacagcacatcaagttgaaatcaaaaatacttgcttgtgccccatccaatttggcagta
gataatttggttgaacgacttgctgcagtgggcgtaaatgttgttcgaattggtcatcca
gctcgagttacatctcttacacagaaatacacacttgatgcaattttgcataattgtgaa
gaagcagaacttctgaaggacattcacaaggatatcagtgagcagctaaataaattaaag
aaaactaatgaaaaaggaaaaagacattacatcagaaatgaaataaaattgtttagaaaa
gaattacgtgaaagagaaacgagattaaccaagcaaatcttgacaacctgtgatgttatt
ttagctactcttactagttgtggaaatgatggtccacttcgacacctcccacaggaacac
ttggatttaatagtcatcgacgaatgttcgcaggcaattgaagcatcatgttacccatca
atattaagagctcccaaagtgattttagctggtgatcactgtcagttacccccaacaatt
ctttcccaagaagctgctgcaaagggcttggcactttcattaatggagaggctgattggt
ctttatggtgatactgttgtcaggatgttgactgttcagtatagaatgaactcattgata
atggactgggcatcagctgccctttatgatgacagactgacagcccatccctcagtagca
aaccatttattaagtcagttaaaggatgttacaactaatgatgatacagaacatgcttta
atgttgattgacactgctgggtgcgactgctacgagctgaatactccggaggagcaaagt
aaaggcaataggaacgaagctattgtcgtcagttgccacgtgaagaatctcttggctgct
ggtgttcctgagactgacattgctgtcattacgccctacaatctgcaggttgaactaatc
cgaagcttgctacgaaaccatcaccctcaagttgaagttcgatctgtagatggatttcag
ggaagagaaaaagaagcagttgttatatctcttgttcgttcaaatgaagaaggaaaagtt
ggatttctaagtgaaaatcgtcgtctcaatgtagcagtcaccagagcacgccgccacttg
tgtattgttggtgatagtgaaaccgttaccagacatacttttttgaagactttgataaat
tacctatgtgagcatggtattgttagaagtgctcatgaattccagaatgacattgatact
gttgatgttgaaatgccagaaagtttgatactaatacgagataaggacctgaaaaagagc
aagccagatagcacaagtgattataaaaaagtaaagcaaaaaaaagcctccaaacctcca
cctccaacagaagaagaaaacaggaaacgaaagattgagtttgagaagatcatcaaacag
ttcttggactcgccttcacagacccattcgtttgctgccaacttgaattcttatgaaaga
aggttgatacatgaaattgctggaagttttgggttgaagcatgaaagccaaggggaaggc
gaagaacgacatattgtaattagaaaagcaggtgaaggagaaaaccaaagtgaaaaattg
ccttcgacaaaagaatcaagtgaggacagcaaagatgaaattgaagaagagcaacaggtt
tattcccttaaaagagaatatgaggaaataattgatgatttcgtaggtacacatgctaat
acatataaatttccccacagtcttagcgcacatgaaaggcagatagttcatgcagcagca
gaggaaagaggcctgaaacatgaaagtattcaagaagggaagaaacgttatgttataata
cataataaaaatagtccgcttttggttcctaagaatgatgaaaggctgaactcctctatt
gatgggagcaaagtaaatacgttaaaagtagatgactctagtgactcgcaagcattgttt
actggtgctataccaaaagcaggtgtgataagtaataatgaaaatgttagacccaggtct
aacgttgtaactcagacacgtttcattgatggaaaataccaagaagtgaccattagtact
gaaagtaatgtggaaaataaattgccaacaaaggaatgtagatcttgcagaagaaatata
ttacttcagaattatactgttcacagtgtacactgtgagaagcagaaggctgtaagagat
gaagagattaaaaataaaacaaagaagccggaaaagaaaacaaagaagaaaaataaaact
actcagtcagcagaaaaggaggactttgacactattttagagaactttactaaggtacgt
aagtgcaccatgagaaaacttttaacccctcatgccgttaaggattcggcgctatcaacc
ctcaaggtctgggtaggaggatttgggcggaatgtcaagtccaagcaaccctacatgctg
acagaggatatggcctccttgatctatcctaatgcgaagatgtcggcagcggtagcggcg
gacttggcggccccgatcatagccaagatccgtgaagagacccaggccctgccggaagac
ctggaaggttttggagaggaggtacttgacgaggtggcagccatcaatctggaccatgag
cccatggttgtcgacaacccgggtcaaggtagggagttaaatgaggcaggtggtatgcgg
gctaaagttctgtcctttagcccgtctcattcctcttcttcctcttttcaagggtttgct
gggagacctacgacttctagggacaagtcgggctcagtaatccctaaggtaaaaccaact
aaagacacccataggtctattaagaagtcccttcctaagccttctaagccaaagccgatt
aggactagctgcaccagtacgtcttcagcccccgagctgatggcggacttggcaaaagct
gctcccccacgacaggggttgagagctagagggtccaaacccggatctcaggatcctggc
tttgacccggcaacattctccagcatgcttatgcaggagatggggaacttggtgcaaacc
aagttccaagagatctcagcacagctggtctctagcatggagaagaccattagtactgaa
agtaatgtggaaaataaattgccaacaaaggaatgtagatcttgcagaagaaatatatta
cttcagaattatactgttcacagtgtacactgtgagaagcagaaggctgtaagagatgaa
gagattaaaaataaaacaaagaagccggaaaagaaaacaaagaagaaaaataaaactact
cagtcagcagaaaaggaggactttgacactattttagagaactttactaaggaaaacaat
acttgttctcaacctaagtgcaaaactccaacaactgtgatattccaactttgtccattt
tgtagaaaaacattttgcttatctcaccatatggctgaaattcacggttgtggtgaacaa
gctcgaaaacatgcaaggatgatggtgagtcaggaaggcgttttgtatcctgggagtgga
gtgccatcaaaaaaaccttccggagagaggcggaagcagatgcaaaaaaagttagaaaag
aaaatggatgagctagaaagccaaaggaaatccaagaaaagttcaaaggacaaaagttag
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