Macrobrachium nipponense (oriental river prawn): 135210876
Help
Entry
135210876 CDS
T09903
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mnz04147
]
135210876
00535 Proteoglycans [BR:
mnz00535
]
135210876
00536 Glycosaminoglycan binding proteins [BR:
mnz00536
]
135210876
Exosome [BR:
mnz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135210876
Proteoglycans [BR:
mnz00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135210876
Glycosaminoglycan binding proteins [BR:
mnz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135210876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
135210876
NCBI-ProteinID:
XP_064099857
LinkDB
All DBs
Position
4:complement(39457187..40348910)
Genome browser
AA seq
1277 aa
AA seq
DB search
MASSHRRSMLAFAPYLVMVLGLVLCVRTTSASSLFADSNTVPSSETLEELDLIQSIDVPF
SDPLTQYFVTGFDGFPAFGFRLGANIKQPYRLFLPERFYRVFSITVALKPDNANSMFAFA
VTNPLENIIQLGVGLTPAAELGFTNISLYYTDVERHMTSQTIASFIVPEFLGAWSRFAFS
VGEDEIQFFYNCELYNSLLVKRVPKQLVFDSASTLYVGQAGGIFKGDFEGALQELKVFND
PSRANVQCDDSISSFGSGDGRSDISIEDEILSDMEDDEEITLPSFEGSGYDSLDGPLPPP
IPPPPPGYGIPGPKGEKGDAGERGPPGESVAGPPGPPGPPCATEGDMGGAVNFTPAGFEG
GVQGPPGPMGECSCNKSSLVAMVLTQIPKGSPGPKGPQGRDGMPGTPGTAGTPGPPGERG
YPGPPGQKGDRGDQGDPGPEGLQGPKGESGMDGAPGLPGERGPRGPPGPPGWGNPGGIDV
ERVNDGDQSRLGIPGLPGPKGDRGYPGPRGTRGYPGIKGERGNTGKDGGKGEPGRPGEPG
FSGPKGEQGASGTNGVPGPPGFIGLPGDKGQKGDKGPPGIGEPGPPGSPGGLTAHDRRII
IDQLLNTLESKTADPDGSFGAGGINLYDNSGGVPWVTDYDDEDFALEGSGLVAYKPFYPK
GGLRGPPGPPGIPGIQGSPGNPGIPGNPGLPGIKGISGVKGARGENGLPGLPGEIGSPGP
QGLKGDVGPRGPPGPITTIIQPDGTNITVVKGSKGDRGRRGKRGRPGQPGPPGTFGDLGL
PGWPNVTEFGLPGRPGPPGPPGNPGIGIKGENGAPGPPGPPGPPSPSSAGGFFNGILGGS
SSDDTRNSNPGPPGLPGPVGPSGPPGPPGPPGLPAQPLRGIDGEMFIPVPGPAGPPGPPG
PPGPPGLSIEGPEGRPGAPGSPGRGFPGKPGPPGEPGSSIPGPRGNLGGIAELRRWISGK
PRNRGRAGGDGSERSFAVVPGAITFPTRQDMLKMSEASLVGTLAFIIEEEALLVRVNAGW
QYVALGSVIPLPSPTPPPLTTPLNTESARPPPPEGRSLVVENEPKLRLAALNEPFTGDMT
GVRGADYACYREARRAGLSGTFRALLTSRVQNLDSIVRYSDRSLPVVNLKGEILFNSWRD
AFSGSGGTFAQKPRIFSFDLKNVVKDPTWPQKYIWHGSNLDGERALSSYCDAWHTNAKDV
VGLASSLHKNRLLGQERMGCHNSFIVLCIEATGKAHFRRRRHAPHSPHTSSSLSLEQEMT
SEEYQEFLNKIMNEENV
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcccaccggaggtcgatgcttgcctttgctccttacctggtaatggtgttg
gggcttgtcttgtgcgtcagaactacttctgcatcatcgctcttcgcggattcgaacacc
gttcccagctcagaaacgttggaggagctggatttaatccaatccatagatgttcccttt
tcggatcctttgacgcagtacttcgtcacggggtttgatgggttccccgcattcgggttc
cgcctaggggcgaacatcaagcagccctaccggctatttctgcccgagaggttctacagg
gttttctcgatcacggtggccttgaaaccggacaatgcgaattctatgtttgcgtttgcc
gtgacgaaccctctggagaacatcatccagctgggagtgggtctgaccccggcggcagag
ctgggcttcaccaacatctccctctactacacagatgtcgagagacacatgacgtcacag
acgatagcctccttcatagtgccggaattcttgggggcttggagcaggtttgcattcagc
gtcggggaagatgaaatccagtttttttacaactgcgagttgtacaacagcctcttggtc
aaacgagttcccaaacagctggttttcgactcggcgtcgacgctgtacgtcgggcaggcc
gggggcattttcaaaggggactttgagggcgccctccaggagctcaaggtcttcaacgac
cctagcagagcaaatgtccagtgcgacgactccatttcgtcctttggttctggagatgga
agaagcgatattagcattgaagatgaaatcttgtctgacatggaggatgacgaggaaatc
accctcccctccttcgaagggtctggttacgacagccttgatggacctctgcccccacca
atacccccgccgccccctgggtatggcatcccaggacccaaaggagaaaagggtgacgca
ggtgaaaggggtcctccaggagagtccgtggctggtccacctggtcctcctggtcctccc
tgtgcgacggagggcgacatgggaggagctgtcaatttcacgccggcaggatttgaaggg
ggggtgcagggtcctcctggcccaatgggcgaatgttcctgcaacaagtcatccttggtt
gccatggtgttgacgcagatcccgaaaggttcccccgggccgaaaggcccccagggaaga
gatggcatgccgggcacccccgggacggcaggtacccccgggcccccgggcgagagagga
tacccaggacctcctggtcagaaaggagacagaggagatcaaggggatccaggacccgaa
ggtcttcaaggccccaaaggggaatcgggcatggacggtgcccccggacttccgggagag
aggggccctagggggccaccggggcctcctggttggggtaatccaggaggcattgacgtg
gaaagggtgaatgacggggatcagtcgcgcctcggcatccccggccttccaggtcccaag
ggtgacaggggttacccgggtcccaggggtacccgaggataccccggtatcaaaggcgag
cgaggaaacactgggaaagatggaggtaaaggagaaccgggtcgccctggtgaacctgga
ttctcaggtcctaagggagaacaaggagcatctgggacgaatggagttcctggcccgcca
ggattcattggtctacctggggataagggacagaaaggtgacaagggtccacctggtatt
ggggaaccaggccctcccggtagcccaggggggctcacggctcatgatcgacgaataatc
atcgaccagctcctcaacacactcgagagtaagacggctgacccggacggcagcttcgga
gctggcggcataaatctctatgataactcggggggagttccttgggtgacagactacgat
gatgaagatttcgctctggagggatcaggactggtggcctacaagcctttctatccaaag
ggtggcttaagaggaccaccaggaccacctggtataccaggcatccaaggatctccagga
aatccaggtatcccaggaaacccaggattgcctggaatcaaaggaatttcaggagtaaag
ggtgcaagaggtgaaaatggactgccaggactcccaggtgaaataggatcgccagggccc
cagggtttgaaaggagatgttggccccagaggtcctcctggtcctatcactaccattatc
cagcctgatgggaccaacatcactgttgtaaagggcagcaaaggagaccggggcaggcga
ggcaagcgaggtcgtccaggccaaccaggtccaccagggacattcggtgacctgggcctt
cctggctggccgaatgtcactgaatttggactaccaggaagaccaggtccaccgggcccc
cctggtaacccaggaattgggatcaaaggagaaaatggagctccgggaccaccaggaccc
ccaggacctccatcaccatcttctgcaggaggattcttcaatggtatcctcggtggcagt
agttcagacgacacaagaaactcgaatcctggcccaccaggtttgccaggtcctgttggg
ccatcaggtccccctggaccacctggaccacctgggttacccgctcaaccacttagggga
attgatggggagatgttcatccctgtacctggtccagctggaccaccaggtccacctggt
cctcctggccctccagggctgtcaattgaaggccctgaaggtagaccaggtgcccctggg
tcacctggaagagggttccctggaaaaccagggccacctggagagccaggttccagtata
cctggcccaagagggaaccttggaggtattgcagaactacgccgatggatctctggaaag
cccaggaatagaggtcgtgcaggaggagatggcagtgaaagatcctttgctgttgtccca
ggagccattacctttcctacaagacaagatatgctgaagatgagtgaagcttctcttgta
gggactttggcattcataattgaggaggaagcactccttgtaagagtgaatgctggatgg
caatatgttgcgttaggatctgtgatccccttgcccagccctacgccaccaccattaaca
acacccctgaatacagaaagtgctcgaccaccacccccggaaggaagatcacttgttgtg
gaaaatgaacctaagttacgcctggcagcactcaacgagccatttacaggagacatgacg
ggagttcgtggtgctgattatgcctgttatagggaggctagaagagctggtcttagtgga
accttcagagctcttcttacatctagggttcagaacttagattccatagtccgttattca
gacaggagtctgccagtcgtcaatctcaagggagagattctgtttaactcttggcgggat
gccttttcgggatccggaggaacttttgcacagaaacctaggatcttcagctttgattta
aagaatgttgtgaaggaccccacatggccacagaaatatatctggcatggctccaacttg
gatggagaaagagctctttcatcatactgcgatgcatggcacactaacgccaaagatgtt
gttggcttagcatcatccttgcacaagaatcgtctcttgggtcaggagaggatgggctgc
cacaactcttttattgtcctatgcattgaagccaccgggaaagcacacttcaggcgcaga
cgccatgctcctcactcaccacatacatcttcatctttgtcattagaacaggaaatgact
agcgaggagtatcaggaatttttgaataagatcatgaatgaagaaaatgtgtga
DBGET
integrated database retrieval system
