Macrobrachium nipponense (oriental river prawn): 135210947
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Entry
135210947 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135210947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135210947
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
135210947
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
135210947
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
ECR1_N_2
PCB_OB
Motif
Other DBs
NCBI-GeneID:
135210947
NCBI-ProteinID:
XP_064099996
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All DBs
Position
4:complement(71770579..72372954)
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AA seq
290 aa
AA seq
DB search
MEIKLASELPRIQSMVPAHGSARPKLVTPGEIISHDTSFMRGHGTYMEDDVQVASVAGYV
TRVNRLITVTPLRQVYQGAIGDTIIGRITQVQXKRWKVDVNSRLDAELRLTNIQLPGGEQ
RRSSVEDEREMRALLREGDLVCVEVQKINDDGLLRLTARSTKYGKLSQGTLLAFSPSLIV
QDKQRMHDLPCGARVVFGANGYVYITPTVPQEQASTYTVNFEEVPVEVRKTIGRLRNCIK
LLAHHSIMISPTSVMAAFDQSIEQDYEIRDLLRPDVMQDVAMATVQKMNE
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaacttgcctcagaattaccccgaattcagtcgatggtacctgcccatgga
agcgcgcggccaaaacttgtcactcctggagaaatcatttcccacgatacaagtttcatg
agaggacatggtacttatatggaggatgatgtccaggttgcttccgtagcaggttatgtc
acacgtgtgaatcgtctcataactgtcacaccattgcgtcaggtttaccagggtgcaatt
ggagacaccataattggtagaattacgcaagttcaanaaaagaggtggaaagttgatgtc
aattcaagacttgatgctgagctaagattgacaaatattcagcttccaggaggagaacag
agaagaagcagcgttgaagatgagcgagaaatgagggcccttcttcgtgaaggggacctt
gtttgtgttgaagttcaaaaaattaatgatgatggtttactaaggcttacagcacgttca
actaaatatggcaaactgtcacaaggtactttactggctttttccccatcactgattgtc
caagataagcaaagaatgcatgatcttccttgcggggcaagagtagtatttggagcaaat
gggtatgtgtatataactcccacagtaccacaagagcaggcatccacatacacagtgaat
tttgaagaggttccagttgaagttcgaaagacgattggtcgtttgcgtaactgcattaaa
cttctagcgcatcattcaatcatgatttcaccgactagtgtcatggcagcattcgaccag
tccattgaacaagattatgagatcagagacctccttcgtccagatgtgatgcaagatgtg
gctatggcaacagtgcagaaaatgaatgagtaa
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