Macrobrachium nipponense (oriental river prawn): 135211139
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Entry
135211139 CDS
T09903
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03420
Nucleotide excision repair
mnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
135211139
09124 Replication and repair
03420 Nucleotide excision repair
135211139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
mnz03051
]
135211139
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135211139
Proteasome [BR:
mnz03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
135211139
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
135211139
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
Ubiquitin_5
Dsc3_N
Ubiquitin_4
Ubiquitin_2
UBA_BIRC2-3
TECR_N
Motif
Other DBs
NCBI-GeneID:
135211139
NCBI-ProteinID:
XP_064100366
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Position
4:complement(126330906..126440296)
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AA seq
385 aa
AA seq
DB search
MVVLTLKNLQQQTFTVEIELSATVKALKEKVEKEKGGDYPAVGQKLIYAGKILQDDTTLE
SYNIDDKKFLVIMVTKPKPVPPPSTPSDPTAPAESEEASASATATTPATTNTSQSTSNPP
SEAAAAGAPTVTSITTSSTSTPSTQSAPSSQAASAGSVGSAESLLVMGEEFNRMVENIME
MGYERSLVERALRASFNNPYTAVQYLVDGIPANLEEPSGNPPAGGDGEEQVAAEGEPDPE
EDPLSFLRSQPQFEQMRQMIRSNPSLLDAFLQQIGQTNPQLLQVIQQNQEAFVRMLNEGG
SLGGSGGGNGGNQGSGGTGGGGTGGTGGRSASGQSAILVSPQDRDAIERLKALGNFPEDV
VIQAYFACEKNENLAAEFLFSQTWD
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgctcacgttgaagaacttgcaacagcaaaccttcacagtggaaattgagttg
tcggccacggtaaaagctctgaaagagaaggttgaaaaagagaaaggtggtgactaccca
gctgtaggacaaaaacttatatatgcagggaaaattttacaagatgatacgacgttagaa
tcctataatattgatgacaagaagtttttagtcatcatggttacaaaacccaaacctgtg
ccgcctccctccactccttctgatcctacagcccctgccgagtcagaggaagcttccgcc
tcagcaactgcaaccacaccagccaccaccaacacatcacagagcactagtaatccacct
tcagaggctgctgctgctggtgctccaactgttactagtataacgacgagtagtacatca
acaccttcaacacagtccgcaccaagctcacaggctgcctcagcgggaagtgttggaagc
gcagagtctttattagttatgggtgaagaatttaaccgtatggtagaaaacataatggaa
atgggctacgagaggtctttggtggaacgagcactgcgagctagttttaacaatccttac
acagctgtccaatatttagttgatggcatccctgccaatttagaagagccatcaggaaac
cctcctgctggtggagatggagaggaacaagttgctgcagaaggggagcctgatcctgaa
gaggaccccctcagtttcttgcggtcgcagcctcagtttgaacagatgcgacagatgatt
aggtcaaatccttcactattggatgcgtttcttcaacaaatagggcaaactaatccccag
ttactacaagttatacaacaaaatcaagaggcctttgttcgaatgcttaatgaaggtggc
agcttaggaggaagtggtggaggtaatggtggcaaccaaggcagtggtggtactggtggt
ggtggtactggtggcactggtggcagatcagcatcaggccaaagtgcaattttggtttca
cctcaggatagagatgctatagaaaggttgaaggccttggggaacttcccagaagatgtg
gtcattcaggcatattttgcttgcgagaaaaatgagaaccttgcggcagagtttctcttc
agtcagacatgggattag
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